miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9025 3' -59.3 NC_002512.2 + 193826 0.69 0.72378
Target:  5'- -cGGGGUCg---GCGAUaaaagucgggGCGUCCCCGc -3'
miRNA:   3'- acCCCCGGaacaCGCUA----------UGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 152681 0.68 0.742401
Target:  5'- -uGGGGCCggcgGcCGGUcucgucGCGUCCCCGg -3'
miRNA:   3'- acCCCCGGaacaC-GCUA------UGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 39619 0.68 0.760675
Target:  5'- cGGGGcGCUUUGcgGCGAgaugUACGUUUCCu -3'
miRNA:   3'- aCCCC-CGGAACa-CGCU----AUGCAGGGGc -5'
9025 3' -59.3 NC_002512.2 + 165655 0.68 0.778538
Target:  5'- cGGGGGCCUUcc-CGAggccgAgGUCCUCGa -3'
miRNA:   3'- aCCCCCGGAAcacGCUa----UgCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 108441 0.67 0.795928
Target:  5'- cGGGGGCCgg--GgGGUcCcUCCCCGg -3'
miRNA:   3'- aCCCCCGGaacaCgCUAuGcAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 95710 0.67 0.804427
Target:  5'- gGGGGGCCgggagGgGAagACGgcUCCCCGu -3'
miRNA:   3'- aCCCCCGGaaca-CgCUa-UGC--AGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 198698 0.67 0.804427
Target:  5'- gGGGGGuUCUUcggacGUcgaggucaccagGCGGUGCGUCuCCCGg -3'
miRNA:   3'- aCCCCC-GGAA-----CA------------CGCUAUGCAG-GGGC- -5'
9025 3' -59.3 NC_002512.2 + 204735 0.67 0.812785
Target:  5'- gGGGGGCCggacccggGUGCucaGCGaUCCCGg -3'
miRNA:   3'- aCCCCCGGaa------CACGcuaUGCaGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 222421 0.67 0.812785
Target:  5'- cGGGGGCCggcagccGCGccGCGgcuucCCCCGg -3'
miRNA:   3'- aCCCCCGGaaca---CGCuaUGCa----GGGGC- -5'
9025 3' -59.3 NC_002512.2 + 126919 0.67 0.829052
Target:  5'- gGGGaGGCCgggcUG-GCGAUACccgcccgcgCCCCGg -3'
miRNA:   3'- aCCC-CCGGa---ACaCGCUAUGca-------GGGGC- -5'
9025 3' -59.3 NC_002512.2 + 76114 0.66 0.852225
Target:  5'- gGGGGcGCCggggugGUGuCGAUgACGUCgUCCGa -3'
miRNA:   3'- aCCCC-CGGaa----CAC-GCUA-UGCAG-GGGC- -5'
9025 3' -59.3 NC_002512.2 + 101705 0.66 0.852225
Target:  5'- cGGcGGCCcgcucgGCGAccuCGUCCCCGg -3'
miRNA:   3'- aCCcCCGGaaca--CGCUau-GCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 38105 0.66 0.859597
Target:  5'- gUGGGaaucucuGCCUgucacggGCGAUcCGUCCCCGu -3'
miRNA:   3'- -ACCCc------CGGAaca----CGCUAuGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 210849 0.66 0.866074
Target:  5'- cUGGGGGCUgcuccGCGAgaucgagUGCGUgCCCu -3'
miRNA:   3'- -ACCCCCGGaaca-CGCU-------AUGCAgGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.