Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 76114 | 0.66 | 0.852225 |
Target: 5'- gGGGGcGCCggggugGUGuCGAUgACGUCgUCCGa -3' miRNA: 3'- aCCCC-CGGaa----CAC-GCUA-UGCAG-GGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 38105 | 0.66 | 0.859597 |
Target: 5'- gUGGGaaucucuGCCUgucacggGCGAUcCGUCCCCGu -3' miRNA: 3'- -ACCCc------CGGAaca----CGCUAuGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 210849 | 0.66 | 0.866074 |
Target: 5'- cUGGGGGCUgcuccGCGAgaucgagUGCGUgCCCu -3' miRNA: 3'- -ACCCCCGGaaca-CGCU-------AUGCAgGGGc -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 165655 | 0.68 | 0.778538 |
Target: 5'- cGGGGGCCUUcc-CGAggccgAgGUCCUCGa -3' miRNA: 3'- aCCCCCGGAAcacGCUa----UgCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 95710 | 0.67 | 0.804427 |
Target: 5'- gGGGGGCCgggagGgGAagACGgcUCCCCGu -3' miRNA: 3'- aCCCCCGGaaca-CgCUa-UGC--AGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 198698 | 0.67 | 0.804427 |
Target: 5'- gGGGGGuUCUUcggacGUcgaggucaccagGCGGUGCGUCuCCCGg -3' miRNA: 3'- aCCCCC-GGAA-----CA------------CGCUAUGCAG-GGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 193826 | 0.69 | 0.72378 |
Target: 5'- -cGGGGUCg---GCGAUaaaagucgggGCGUCCCCGc -3' miRNA: 3'- acCCCCGGaacaCGCUA----------UGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 152681 | 0.68 | 0.742401 |
Target: 5'- -uGGGGCCggcgGcCGGUcucgucGCGUCCCCGg -3' miRNA: 3'- acCCCCGGaacaC-GCUA------UGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 108441 | 0.67 | 0.795928 |
Target: 5'- cGGGGGCCgg--GgGGUcCcUCCCCGg -3' miRNA: 3'- aCCCCCGGaacaCgCUAuGcAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 204735 | 0.67 | 0.812785 |
Target: 5'- gGGGGGCCggacccggGUGCucaGCGaUCCCGg -3' miRNA: 3'- aCCCCCGGaa------CACGcuaUGCaGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 126919 | 0.67 | 0.829052 |
Target: 5'- gGGGaGGCCgggcUG-GCGAUACccgcccgcgCCCCGg -3' miRNA: 3'- aCCC-CCGGa---ACaCGCUAUGca-------GGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 227711 | 0.73 | 0.503804 |
Target: 5'- cGGGGGC-----GCGGUACgGUCCCCGa -3' miRNA: 3'- aCCCCCGgaacaCGCUAUG-CAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 222421 | 0.67 | 0.812785 |
Target: 5'- cGGGGGCCggcagccGCGccGCGgcuucCCCCGg -3' miRNA: 3'- aCCCCCGGaaca---CGCuaUGCa----GGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 39619 | 0.68 | 0.760675 |
Target: 5'- cGGGGcGCUUUGcgGCGAgaugUACGUUUCCu -3' miRNA: 3'- aCCCC-CGGAACa-CGCU----AUGCAGGGGc -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 159922 | 1.09 | 0.002392 |
Target: 5'- cUGGGGGCCUUGUGCGAUACGUCCCCGg -3' miRNA: 3'- -ACCCCCGGAACACGCUAUGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 101705 | 0.66 | 0.852225 |
Target: 5'- cGGcGGCCcgcucgGCGAccuCGUCCCCGg -3' miRNA: 3'- aCCcCCGGaaca--CGCUau-GCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 42615 | 0.66 | 0.866785 |
Target: 5'- cGGGGGCaCUUcgagGCGA--CGUCCgCCa -3' miRNA: 3'- aCCCCCG-GAAca--CGCUauGCAGG-GGc -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 57221 | 0.66 | 0.859597 |
Target: 5'- cGaGGGCCgagacGCGG-GCGUCCCCGc -3' miRNA: 3'- aCcCCCGGaaca-CGCUaUGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 2494 | 0.66 | 0.844672 |
Target: 5'- cGGGcGGCCUUG-GgGA-ACGgaucucCCCCGa -3' miRNA: 3'- aCCC-CCGGAACaCgCUaUGCa-----GGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 128580 | 0.67 | 0.836946 |
Target: 5'- cGGGGGCCgacccUGCGAgaggccgggACGUCCg-- -3' miRNA: 3'- aCCCCCGGaac--ACGCUa--------UGCAGGggc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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