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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9030 | 5' | -52.5 | NC_002512.2 | + | 220393 | 0.66 | 0.995292 |
Target: 5'- cCGGccgUCGucuacCCGCCGCUCgCGGGc -3' miRNA: 3'- -GCUuaaAGCuua--GGCGGCGAG-GCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 205888 | 0.66 | 0.995292 |
Target: 5'- uCGcGUcgCGggUCC-CCGCUCgCGGGa -3' miRNA: 3'- -GCuUAaaGCuuAGGcGGCGAG-GCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 137873 | 0.66 | 0.993716 |
Target: 5'- cCGAcgcccgCGAGUCCGCCGCcggcgacgCgGGAg -3' miRNA: 3'- -GCUuaaa--GCUUAGGCGGCGa-------GgCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 135851 | 0.66 | 0.992782 |
Target: 5'- cCGAAga---GAUCCGCCGCgaaaccgagcgUCCGGGUc -3' miRNA: 3'- -GCUUaaagcUUAGGCGGCG-----------AGGCCUA- -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 109061 | 0.66 | 0.992782 |
Target: 5'- aCGAc---CGGAcCCGCCGCgucCCGGGUc -3' miRNA: 3'- -GCUuaaaGCUUaGGCGGCGa--GGCCUA- -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 98563 | 0.67 | 0.987894 |
Target: 5'- aGAGggUCGGA-CgGCCGUugaUCCGGAg -3' miRNA: 3'- gCUUaaAGCUUaGgCGGCG---AGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 53343 | 0.68 | 0.980767 |
Target: 5'- aGggUaUCGAGcccgagcgagccUCCGCacauagaggaCGCUCCGGAg -3' miRNA: 3'- gCuuAaAGCUU------------AGGCG----------GCGAGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 3119 | 0.68 | 0.980128 |
Target: 5'- uGAAUUcacUCGAauGaccggccgcacgccUCCGCCGuCUCCGGGa -3' miRNA: 3'- gCUUAA---AGCU--U--------------AGGCGGC-GAGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 75624 | 0.68 | 0.978575 |
Target: 5'- ----cUUCGGcuccccUCCGCCGCUCCGuGGa -3' miRNA: 3'- gcuuaAAGCUu-----AGGCGGCGAGGC-CUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 154581 | 1.05 | 0.016272 |
Target: 5'- uCGAAUUUCGAAUCCGCCGCUCCGGAUu -3' miRNA: 3'- -GCUUAAAGCUUAGGCGGCGAGGCCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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