miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 5' -52.5 NC_002512.2 + 75326 0.7 0.941212
Target:  5'- uCGAAUUugaaaaUCGAggCgGgCGCUCCGGAUu -3'
miRNA:   3'- -GCUUAA------AGCUuaGgCgGCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 78941 0.69 0.954011
Target:  5'- ------cCGAGUCCGCgGCcgCCGGAg -3'
miRNA:   3'- gcuuaaaGCUUAGGCGgCGa-GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 81790 0.69 0.954011
Target:  5'- ----cUUCGGcgCCGCCGCcgccgCCGGGg -3'
miRNA:   3'- gcuuaAAGCUuaGGCGGCGa----GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 25193 0.69 0.957821
Target:  5'- cCGAcg-UCGcGUCCGCCGCgaCGGAg -3'
miRNA:   3'- -GCUuaaAGCuUAGGCGGCGagGCCUa -5'
9030 5' -52.5 NC_002512.2 + 85605 0.68 0.980767
Target:  5'- ----gUUCGGGugccUCCGCCGCcUCUGGGa -3'
miRNA:   3'- gcuuaAAGCUU----AGGCGGCG-AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 18420 0.68 0.977174
Target:  5'- uCGAGgugUCGGAUCCggggcagccgcaggcGCCcgaGCUCCGGGc -3'
miRNA:   3'- -GCUUaa-AGCUUAGG---------------CGG---CGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 16998 0.69 0.96794
Target:  5'- cCGAc--UCGGuccauggCCGCCGuCUCCGGAg -3'
miRNA:   3'- -GCUuaaAGCUua-----GGCGGC-GAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 102396 0.69 0.96478
Target:  5'- cCGAGguuccagcCGAcgUCGCCGCgUCCGGAc -3'
miRNA:   3'- -GCUUaaa-----GCUuaGGCGGCG-AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 224064 0.69 0.96478
Target:  5'- gCGAccAUUUCGAcgCCGCCGaa-CGGGg -3'
miRNA:   3'- -GCU--UAAAGCUuaGGCGGCgagGCCUa -5'
9030 5' -52.5 NC_002512.2 + 107866 0.68 0.976203
Target:  5'- gCGAGcg-CcGAUCCGCCGCcUCCGGc- -3'
miRNA:   3'- -GCUUaaaGcUUAGGCGGCG-AGGCCua -5'
9030 5' -52.5 NC_002512.2 + 95311 0.68 0.978575
Target:  5'- aCGGAccgCGGG-CCGCCGUaCCGGAa -3'
miRNA:   3'- -GCUUaaaGCUUaGGCGGCGaGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 75624 0.68 0.978575
Target:  5'- ----cUUCGGcuccccUCCGCCGCUCCGuGGa -3'
miRNA:   3'- gcuuaAAGCUu-----AGGCGGCGAGGC-CUa -5'
9030 5' -52.5 NC_002512.2 + 3119 0.68 0.980128
Target:  5'- uGAAUUcacUCGAauGaccggccgcacgccUCCGCCGuCUCCGGGa -3'
miRNA:   3'- gCUUAA---AGCU--U--------------AGGCGGC-GAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 53343 0.68 0.980767
Target:  5'- aGggUaUCGAGcccgagcgagccUCCGCacauagaggaCGCUCCGGAg -3'
miRNA:   3'- gCuuAaAGCUU------------AGGCG----------GCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 98563 0.67 0.987894
Target:  5'- aGAGggUCGGA-CgGCCGUugaUCCGGAg -3'
miRNA:   3'- gCUUaaAGCUUaGgCGGCG---AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 109061 0.66 0.992782
Target:  5'- aCGAc---CGGAcCCGCCGCgucCCGGGUc -3'
miRNA:   3'- -GCUuaaaGCUUaGGCGGCGa--GGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 135851 0.66 0.992782
Target:  5'- cCGAAga---GAUCCGCCGCgaaaccgagcgUCCGGGUc -3'
miRNA:   3'- -GCUUaaagcUUAGGCGGCG-----------AGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 137873 0.66 0.993716
Target:  5'- cCGAcgcccgCGAGUCCGCCGCcggcgacgCgGGAg -3'
miRNA:   3'- -GCUuaaa--GCUUAGGCGGCGa-------GgCCUa -5'
9030 5' -52.5 NC_002512.2 + 205888 0.66 0.995292
Target:  5'- uCGcGUcgCGggUCC-CCGCUCgCGGGa -3'
miRNA:   3'- -GCuUAaaGCuuAGGcGGCGAG-GCCUa -5'
9030 5' -52.5 NC_002512.2 + 154581 1.05 0.016272
Target:  5'- uCGAAUUUCGAAUCCGCCGCUCCGGAUu -3'
miRNA:   3'- -GCUUAAAGCUUAGGCGGCGAGGCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.