Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9030 | 5' | -52.5 | NC_002512.2 | + | 82179 | 0.67 | 0.989305 |
Target: 5'- gGAGggUCGAgagcccGUCCGCCGUcgggCCGGc- -3' miRNA: 3'- gCUUaaAGCU------UAGGCGGCGa---GGCCua -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 85605 | 0.68 | 0.980767 |
Target: 5'- ----gUUCGGGugccUCCGCCGCcUCUGGGa -3' miRNA: 3'- gcuuaAAGCUU----AGGCGGCG-AGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 88483 | 0.75 | 0.738549 |
Target: 5'- aGGAUcUUCGGguggAUCCgcaGCCGCUCCGGGUg -3' miRNA: 3'- gCUUA-AAGCU----UAGG---CGGCGAGGCCUA- -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 95311 | 0.68 | 0.978575 |
Target: 5'- aCGGAccgCGGG-CCGCCGUaCCGGAa -3' miRNA: 3'- -GCUUaaaGCUUaGGCGGCGaGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 96682 | 0.67 | 0.986342 |
Target: 5'- aCGAgg-UCGAucucugUCGCCGCgugCCGGAc -3' miRNA: 3'- -GCUuaaAGCUua----GGCGGCGa--GGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 98563 | 0.67 | 0.987894 |
Target: 5'- aGAGggUCGGA-CgGCCGUugaUCCGGAg -3' miRNA: 3'- gCUUaaAGCUUaGgCGGCG---AGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 102396 | 0.69 | 0.96478 |
Target: 5'- cCGAGguuccagcCGAcgUCGCCGCgUCCGGAc -3' miRNA: 3'- -GCUUaaa-----GCUuaGGCGGCG-AGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 107866 | 0.68 | 0.976203 |
Target: 5'- gCGAGcg-CcGAUCCGCCGCcUCCGGc- -3' miRNA: 3'- -GCUUaaaGcUUAGGCGGCG-AGGCCua -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 109061 | 0.66 | 0.992782 |
Target: 5'- aCGAc---CGGAcCCGCCGCgucCCGGGUc -3' miRNA: 3'- -GCUuaaaGCUUaGGCGGCGa--GGCCUA- -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 114279 | 0.66 | 0.991741 |
Target: 5'- ------gCGggUCCGCCGCgUCCGu-- -3' miRNA: 3'- gcuuaaaGCuuAGGCGGCG-AGGCcua -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 118618 | 0.66 | 0.99455 |
Target: 5'- gGGAcgUCGAcaucaagcucGUCCGCgugccgcccgaCGCUCCGGGc -3' miRNA: 3'- gCUUaaAGCU----------UAGGCG-----------GCGAGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 119332 | 0.66 | 0.995292 |
Target: 5'- -----cUCGAuggCCGCCgagguGCUCCGGGc -3' miRNA: 3'- gcuuaaAGCUua-GGCGG-----CGAGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 126325 | 0.7 | 0.931513 |
Target: 5'- uGGAcgaCGAggCCGCCGCgUCCGGGa -3' miRNA: 3'- gCUUaaaGCUuaGGCGGCG-AGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 127835 | 0.7 | 0.936481 |
Target: 5'- gGAGgucgUCGGcggcGUCCGCCGCgaagCUGGAc -3' miRNA: 3'- gCUUaa--AGCU----UAGGCGGCGa---GGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 131068 | 0.72 | 0.876258 |
Target: 5'- cCGGAgg-CcGAUCCGUCGCUCCGGc- -3' miRNA: 3'- -GCUUaaaGcUUAGGCGGCGAGGCCua -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 135094 | 0.71 | 0.91519 |
Target: 5'- aCGGAgcagUCG-AUCCaggaGCUGCUCCGGAc -3' miRNA: 3'- -GCUUaa--AGCuUAGG----CGGCGAGGCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 135851 | 0.66 | 0.992782 |
Target: 5'- cCGAAga---GAUCCGCCGCgaaaccgagcgUCCGGGUc -3' miRNA: 3'- -GCUUaaagcUUAGGCGGCG-----------AGGCCUA- -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 137339 | 0.67 | 0.984643 |
Target: 5'- cCGAcgUcgUCGccgcggCCGCCGCggCCGGGUa -3' miRNA: 3'- -GCUuaA--AGCuua---GGCGGCGa-GGCCUA- -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 137873 | 0.66 | 0.993716 |
Target: 5'- cCGAcgcccgCGAGUCCGCCGCcggcgacgCgGGAg -3' miRNA: 3'- -GCUuaaa--GCUUAGGCGGCGa-------GgCCUa -5' |
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9030 | 5' | -52.5 | NC_002512.2 | + | 140867 | 0.7 | 0.933528 |
Target: 5'- gGAGUUcgcUCGGAUCgCGCugcccgacguccccgCGCUCCGGGUc -3' miRNA: 3'- gCUUAA---AGCUUAG-GCG---------------GCGAGGCCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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