miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 5' -52.5 NC_002512.2 + 10450 0.67 0.990585
Target:  5'- aCGGGggcgCGGAggaggccgCCGCCGCcCCGGGc -3'
miRNA:   3'- -GCUUaaa-GCUUa-------GGCGGCGaGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 85605 0.68 0.980767
Target:  5'- ----gUUCGGGugccUCCGCCGCcUCUGGGa -3'
miRNA:   3'- gcuuaAAGCUU----AGGCGGCG-AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 12304 0.68 0.982787
Target:  5'- cCGAGg--CGGcgCCGCCGgaCCGGc- -3'
miRNA:   3'- -GCUUaaaGCUuaGGCGGCgaGGCCua -5'
9030 5' -52.5 NC_002512.2 + 41095 0.67 0.984643
Target:  5'- gCGA---UCGGggCCGCCGaggCCGGAg -3'
miRNA:   3'- -GCUuaaAGCUuaGGCGGCga-GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 74621 0.67 0.984643
Target:  5'- gCGGAgcgCGAGaCCGCCGCgcgacggcCCGGGg -3'
miRNA:   3'- -GCUUaaaGCUUaGGCGGCGa-------GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 137339 0.67 0.984643
Target:  5'- cCGAcgUcgUCGccgcggCCGCCGCggCCGGGUa -3'
miRNA:   3'- -GCUuaA--AGCuua---GGCGGCGa-GGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 96682 0.67 0.986342
Target:  5'- aCGAgg-UCGAucucugUCGCCGCgugCCGGAc -3'
miRNA:   3'- -GCUuaaAGCUua----GGCGGCGa--GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 82179 0.67 0.989305
Target:  5'- gGAGggUCGAgagcccGUCCGCCGUcgggCCGGc- -3'
miRNA:   3'- gCUUaaAGCU------UAGGCGGCGa---GGCCua -5'
9030 5' -52.5 NC_002512.2 + 218138 0.67 0.989305
Target:  5'- ----cUUCG--UCUGuuGCUCCGGAUa -3'
miRNA:   3'- gcuuaAAGCuuAGGCggCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 18420 0.68 0.977174
Target:  5'- uCGAGgugUCGGAUCCggggcagccgcaggcGCCcgaGCUCCGGGc -3'
miRNA:   3'- -GCUUaa-AGCUUAGG---------------CGG---CGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 16998 0.69 0.96794
Target:  5'- cCGAc--UCGGuccauggCCGCCGuCUCCGGAg -3'
miRNA:   3'- -GCUuaaAGCUua-----GGCGGC-GAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 102396 0.69 0.96478
Target:  5'- cCGAGguuccagcCGAcgUCGCCGCgUCCGGAc -3'
miRNA:   3'- -GCUUaaa-----GCUuaGGCGGCG-AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 131068 0.72 0.876258
Target:  5'- cCGGAgg-CcGAUCCGUCGCUCCGGc- -3'
miRNA:   3'- -GCUUaaaGcUUAGGCGGCGAGGCCua -5'
9030 5' -52.5 NC_002512.2 + 28524 0.71 0.909276
Target:  5'- gGggUgagcugUCGggUCCGCCGCcgCCcGAUg -3'
miRNA:   3'- gCuuAa-----AGCuuAGGCGGCGa-GGcCUA- -5'
9030 5' -52.5 NC_002512.2 + 140867 0.7 0.933528
Target:  5'- gGAGUUcgcUCGGAUCgCGCugcccgacguccccgCGCUCCGGGUc -3'
miRNA:   3'- gCUUAA---AGCUUAG-GCG---------------GCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 75326 0.7 0.941212
Target:  5'- uCGAAUUugaaaaUCGAggCgGgCGCUCCGGAUu -3'
miRNA:   3'- -GCUUAA------AGCUuaGgCgGCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 78941 0.69 0.954011
Target:  5'- ------cCGAGUCCGCgGCcgCCGGAg -3'
miRNA:   3'- gcuuaaaGCUUAGGCGgCGa-GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 81790 0.69 0.954011
Target:  5'- ----cUUCGGcgCCGCCGCcgccgCCGGGg -3'
miRNA:   3'- gcuuaAAGCUuaGGCGGCGa----GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 25193 0.69 0.957821
Target:  5'- cCGAcg-UCGcGUCCGCCGCgaCGGAg -3'
miRNA:   3'- -GCUuaaAGCuUAGGCGGCGagGCCUa -5'
9030 5' -52.5 NC_002512.2 + 224064 0.69 0.96478
Target:  5'- gCGAccAUUUCGAcgCCGCCGaa-CGGGg -3'
miRNA:   3'- -GCU--UAAAGCUuaGGCGGCgagGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.