miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 5' -52.5 NC_002512.2 + 154581 1.05 0.016272
Target:  5'- uCGAAUUUCGAAUCCGCCGCUCCGGAUu -3'
miRNA:   3'- -GCUUAAAGCUUAGGCGGCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 155063 0.77 0.628117
Target:  5'- cCGAGUugUUCGuccgCCGCCGCUgCCGGGUg -3'
miRNA:   3'- -GCUUA--AAGCuua-GGCGGCGA-GGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 88483 0.75 0.738549
Target:  5'- aGGAUcUUCGGguggAUCCgcaGCCGCUCCGGGUg -3'
miRNA:   3'- gCUUA-AAGCU----UAGG---CGGCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 158324 0.74 0.803782
Target:  5'- cCGGcg--CGAGUCCG-CGCUCCGGAc -3'
miRNA:   3'- -GCUuaaaGCUUAGGCgGCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 145412 0.72 0.876258
Target:  5'- cCGggUcuucUUCGGcucGUCCGCCGCggugCUGGAc -3'
miRNA:   3'- -GCuuA----AAGCU---UAGGCGGCGa---GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 131068 0.72 0.876258
Target:  5'- cCGGAgg-CcGAUCCGUCGCUCCGGc- -3'
miRNA:   3'- -GCUUaaaGcUUAGGCGGCGAGGCCua -5'
9030 5' -52.5 NC_002512.2 + 28524 0.71 0.909276
Target:  5'- gGggUgagcugUCGggUCCGCCGCcgCCcGAUg -3'
miRNA:   3'- gCuuAa-----AGCuuAGGCGGCGa-GGcCUA- -5'
9030 5' -52.5 NC_002512.2 + 135094 0.71 0.91519
Target:  5'- aCGGAgcagUCG-AUCCaggaGCUGCUCCGGAc -3'
miRNA:   3'- -GCUUaa--AGCuUAGG----CGGCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 126325 0.7 0.931513
Target:  5'- uGGAcgaCGAggCCGCCGCgUCCGGGa -3'
miRNA:   3'- gCUUaaaGCUuaGGCGGCG-AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 140867 0.7 0.933528
Target:  5'- gGAGUUcgcUCGGAUCgCGCugcccgacguccccgCGCUCCGGGUc -3'
miRNA:   3'- gCUUAA---AGCUUAG-GCG---------------GCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 127835 0.7 0.936481
Target:  5'- gGAGgucgUCGGcggcGUCCGCCGCgaagCUGGAc -3'
miRNA:   3'- gCUUaa--AGCU----UAGGCGGCGa---GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 8821 0.7 0.936481
Target:  5'- uCGGucgUUCGAAUCagGCCagaauGCUCCGGAa -3'
miRNA:   3'- -GCUua-AAGCUUAGg-CGG-----CGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 75326 0.7 0.941212
Target:  5'- uCGAAUUugaaaaUCGAggCgGgCGCUCCGGAUu -3'
miRNA:   3'- -GCUUAA------AGCUuaGgCgGCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 27519 0.7 0.949975
Target:  5'- --uAUUUCGAcgacccgCCGCCGC-CCGGAc -3'
miRNA:   3'- gcuUAAAGCUua-----GGCGGCGaGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 78941 0.69 0.954011
Target:  5'- ------cCGAGUCCGCgGCcgCCGGAg -3'
miRNA:   3'- gcuuaaaGCUUAGGCGgCGa-GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 81790 0.69 0.954011
Target:  5'- ----cUUCGGcgCCGCCGCcgccgCCGGGg -3'
miRNA:   3'- gcuuaAAGCUuaGGCGGCGa----GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 25193 0.69 0.957821
Target:  5'- cCGAcg-UCGcGUCCGCCGCgaCGGAg -3'
miRNA:   3'- -GCUuaaAGCuUAGGCGGCGagGCCUa -5'
9030 5' -52.5 NC_002512.2 + 156993 0.69 0.96141
Target:  5'- ----cUUCGg--CCGCCGCUUCGGGc -3'
miRNA:   3'- gcuuaAAGCuuaGGCGGCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 102396 0.69 0.96478
Target:  5'- cCGAGguuccagcCGAcgUCGCCGCgUCCGGAc -3'
miRNA:   3'- -GCUUaaa-----GCUuaGGCGGCG-AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 224064 0.69 0.96478
Target:  5'- gCGAccAUUUCGAcgCCGCCGaa-CGGGg -3'
miRNA:   3'- -GCU--UAAAGCUuaGGCGGCgagGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.