miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 5' -52.5 NC_002512.2 + 220393 0.66 0.995292
Target:  5'- cCGGccgUCGucuacCCGCCGCUCgCGGGc -3'
miRNA:   3'- -GCUuaaAGCuua--GGCGGCGAG-GCCUa -5'
9030 5' -52.5 NC_002512.2 + 145412 0.72 0.876258
Target:  5'- cCGggUcuucUUCGGcucGUCCGCCGCggugCUGGAc -3'
miRNA:   3'- -GCuuA----AAGCU---UAGGCGGCGa---GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 88483 0.75 0.738549
Target:  5'- aGGAUcUUCGGguggAUCCgcaGCCGCUCCGGGUg -3'
miRNA:   3'- gCUUA-AAGCU----UAGG---CGGCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 154581 1.05 0.016272
Target:  5'- uCGAAUUUCGAAUCCGCCGCUCCGGAUu -3'
miRNA:   3'- -GCUUAAAGCUUAGGCGGCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 109061 0.66 0.992782
Target:  5'- aCGAc---CGGAcCCGCCGCgucCCGGGUc -3'
miRNA:   3'- -GCUuaaaGCUUaGGCGGCGa--GGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 98563 0.67 0.987894
Target:  5'- aGAGggUCGGA-CgGCCGUugaUCCGGAg -3'
miRNA:   3'- gCUUaaAGCUUaGgCGGCG---AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 3119 0.68 0.980128
Target:  5'- uGAAUUcacUCGAauGaccggccgcacgccUCCGCCGuCUCCGGGa -3'
miRNA:   3'- gCUUAA---AGCU--U--------------AGGCGGC-GAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 75624 0.68 0.978575
Target:  5'- ----cUUCGGcuccccUCCGCCGCUCCGuGGa -3'
miRNA:   3'- gcuuaAAGCUu-----AGGCGGCGAGGC-CUa -5'
9030 5' -52.5 NC_002512.2 + 156993 0.69 0.96141
Target:  5'- ----cUUCGg--CCGCCGCUUCGGGc -3'
miRNA:   3'- gcuuaAAGCuuaGGCGGCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 135094 0.71 0.91519
Target:  5'- aCGGAgcagUCG-AUCCaggaGCUGCUCCGGAc -3'
miRNA:   3'- -GCUUaa--AGCuUAGG----CGGCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 127835 0.7 0.936481
Target:  5'- gGAGgucgUCGGcggcGUCCGCCGCgaagCUGGAc -3'
miRNA:   3'- gCUUaa--AGCU----UAGGCGGCGa---GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 107866 0.68 0.976203
Target:  5'- gCGAGcg-CcGAUCCGCCGCcUCCGGc- -3'
miRNA:   3'- -GCUUaaaGcUUAGGCGGCG-AGGCCua -5'
9030 5' -52.5 NC_002512.2 + 205888 0.66 0.995292
Target:  5'- uCGcGUcgCGggUCC-CCGCUCgCGGGa -3'
miRNA:   3'- -GCuUAaaGCuuAGGcGGCGAG-GCCUa -5'
9030 5' -52.5 NC_002512.2 + 8821 0.7 0.936481
Target:  5'- uCGGucgUUCGAAUCagGCCagaauGCUCCGGAa -3'
miRNA:   3'- -GCUua-AAGCUUAGg-CGG-----CGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 137873 0.66 0.993716
Target:  5'- cCGAcgcccgCGAGUCCGCCGCcggcgacgCgGGAg -3'
miRNA:   3'- -GCUuaaa--GCUUAGGCGGCGa-------GgCCUa -5'
9030 5' -52.5 NC_002512.2 + 95311 0.68 0.978575
Target:  5'- aCGGAccgCGGG-CCGCCGUaCCGGAa -3'
miRNA:   3'- -GCUUaaaGCUUaGGCGGCGaGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 126325 0.7 0.931513
Target:  5'- uGGAcgaCGAggCCGCCGCgUCCGGGa -3'
miRNA:   3'- gCUUaaaGCUuaGGCGGCG-AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 158324 0.74 0.803782
Target:  5'- cCGGcg--CGAGUCCG-CGCUCCGGAc -3'
miRNA:   3'- -GCUuaaaGCUUAGGCgGCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 135851 0.66 0.992782
Target:  5'- cCGAAga---GAUCCGCCGCgaaaccgagcgUCCGGGUc -3'
miRNA:   3'- -GCUUaaagcUUAGGCGGCG-----------AGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 53343 0.68 0.980767
Target:  5'- aGggUaUCGAGcccgagcgagccUCCGCacauagaggaCGCUCCGGAg -3'
miRNA:   3'- gCuuAaAGCUU------------AGGCG----------GCGAGGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.