miRNA display CGI


Results 81 - 100 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 95243 0.69 0.870078
Target:  5'- -uCCGGagGGGGCgU-CCGG-AGGGCCg -3'
miRNA:   3'- auGGCCa-UCCUGgAuGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 167737 0.7 0.823893
Target:  5'- aGCgGGgcgAGGAgCUGCCGGgcgucGGcGACCg -3'
miRNA:   3'- aUGgCCa--UCCUgGAUGGCCa----UC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 132012 0.7 0.823069
Target:  5'- cGCCGGgGGGACCUcggcggcgacgucGUCGGccaGGGACCg -3'
miRNA:   3'- aUGGCCaUCCUGGA-------------UGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 149127 0.7 0.815586
Target:  5'- aGCCGcG-AGGACCc-CCGGgacccGGGACCg -3'
miRNA:   3'- aUGGC-CaUCCUGGauGGCCa----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 119562 0.7 0.815586
Target:  5'- gACCGGgcGGACCgcgggagcCCGGcGGGuCCc -3'
miRNA:   3'- aUGGCCauCCUGGau------GGCCaUCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 201849 0.7 0.807124
Target:  5'- gGCCGGcagcucgccUGGGGCCUG-CGGUccgAGGACg -3'
miRNA:   3'- aUGGCC---------AUCCUGGAUgGCCA---UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 108509 0.7 0.789762
Target:  5'- gGCCGGgcccGGcGCCcgACCGGccgGGGACCc -3'
miRNA:   3'- aUGGCCau--CC-UGGa-UGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 123728 0.7 0.798513
Target:  5'- gACCuGUGcucGGACCUGCgGGgucGGACCu -3'
miRNA:   3'- aUGGcCAU---CCUGGAUGgCCau-CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 157362 0.71 0.780877
Target:  5'- cGCCGaGguccGGGCC-GCCGGgcaGGGACCg -3'
miRNA:   3'- aUGGC-Cau--CCUGGaUGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 227968 0.71 0.762743
Target:  5'- aGCCGGagaggAGGGCC--CCGGcgccgAGGGCCg -3'
miRNA:   3'- aUGGCCa----UCCUGGauGGCCa----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 114132 0.71 0.762743
Target:  5'- cACCGGUccgAGGAgCaGCCGGcagAGGACg -3'
miRNA:   3'- aUGGCCA---UCCUgGaUGGCCa--UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 225981 0.71 0.744176
Target:  5'- gACCGGUcucgggggcaagGGGACCgggacGCCGGUgcugacuccgAGGACg -3'
miRNA:   3'- aUGGCCA------------UCCUGGa----UGGCCA----------UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 113275 0.71 0.762743
Target:  5'- gGCCGGcGGGGCa-GCCGcGgcGGGCCu -3'
miRNA:   3'- aUGGCCaUCCUGgaUGGC-CauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 135217 0.71 0.780877
Target:  5'- gGCCGG-GGGGCCccCCGGccccGGGCCg -3'
miRNA:   3'- aUGGCCaUCCUGGauGGCCau--CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 26239 0.71 0.780877
Target:  5'- gACCGGUAuGGACgUGCUGcugGGGACa -3'
miRNA:   3'- aUGGCCAU-CCUGgAUGGCca-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 72779 0.71 0.762743
Target:  5'- cGCCGGgaGGGACgUcGCCGGgacGGGCCc -3'
miRNA:   3'- aUGGCCa-UCCUGgA-UGGCCau-CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76230 0.71 0.744176
Target:  5'- cUACCGGUAGGuuCCUAuaGGUAGGu-- -3'
miRNA:   3'- -AUGGCCAUCCu-GGAUggCCAUCCugg -5'
9031 3' -56.3 NC_002512.2 + 210830 0.71 0.734751
Target:  5'- -uCCGGUGGGACacgGCCGucugGGGGCUg -3'
miRNA:   3'- auGGCCAUCCUGga-UGGCca--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 120242 0.71 0.771869
Target:  5'- gGCCuGUcguggAGGGCCUACCcGcGGGACCg -3'
miRNA:   3'- aUGGcCA-----UCCUGGAUGGcCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 128189 0.72 0.706009
Target:  5'- cGCCGagcGGGCC-GCCGGcGGGACCg -3'
miRNA:   3'- aUGGCcauCCUGGaUGGCCaUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.