miRNA display CGI


Results 81 - 100 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 8827 0.67 0.930794
Target:  5'- cGCCGGagcuuGGGCCagacgggcucgcUGCCGGgcGGcACCc -3'
miRNA:   3'- aUGGCCau---CCUGG------------AUGGCCauCC-UGG- -5'
9031 3' -56.3 NC_002512.2 + 67963 0.67 0.930794
Target:  5'- cGCCGGUucgccguGGcguCC-GCCGGaggAGGGCCg -3'
miRNA:   3'- aUGGCCAu------CCu--GGaUGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 96393 0.67 0.930794
Target:  5'- aACCGG--GGACUcACCGGcggccucGGACCg -3'
miRNA:   3'- aUGGCCauCCUGGaUGGCCau-----CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 95095 0.67 0.935654
Target:  5'- gACCGGcgucGGGCCcggggacGCgGGUGGGGCUc -3'
miRNA:   3'- aUGGCCau--CCUGGa------UGgCCAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 229562 0.67 0.930794
Target:  5'- cGCCGGcggAGGAgCgcgcGCCGGgaGGGACg -3'
miRNA:   3'- aUGGCCa--UCCUgGa---UGGCCa-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 156439 0.67 0.935654
Target:  5'- gGCCGGgcugGGGGgCU-CCGGgggcggcggGGGACUc -3'
miRNA:   3'- aUGGCCa---UCCUgGAuGGCCa--------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 193452 0.67 0.935654
Target:  5'- cGCCGGUGgcgggagcGGGCCcuCCGGgacgAGGcCCa -3'
miRNA:   3'- aUGGCCAU--------CCUGGauGGCCa---UCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 41539 0.67 0.91431
Target:  5'- gGCCuGGUAgagguugcGGGCCUGCaCGGUGGcgcgcagguucuuGACCu -3'
miRNA:   3'- aUGG-CCAU--------CCUGGAUG-GCCAUC-------------CUGG- -5'
9031 3' -56.3 NC_002512.2 + 139803 0.67 0.914875
Target:  5'- gGCCGGcgGGGGCCUcgguCgGGUguccaAGGACg -3'
miRNA:   3'- aUGGCCa-UCCUGGAu---GgCCA-----UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 169503 0.66 0.960203
Target:  5'- aUAUgGGUGGGGCggGCgUGGgaGGGACCu -3'
miRNA:   3'- -AUGgCCAUCCUGgaUG-GCCa-UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 189666 0.66 0.956648
Target:  5'- cACCGGcgucGGcCCUACUGGUaccGGcGGCCc -3'
miRNA:   3'- aUGGCCau--CCuGGAUGGCCA---UC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 92641 0.66 0.956648
Target:  5'- cGCCGGcgccGGGACCcGCgCGGauccGGGACg -3'
miRNA:   3'- aUGGCCa---UCCUGGaUG-GCCa---UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 114031 0.66 0.960203
Target:  5'- cACCGGgcgcgguGGACgUAgaGGgcGGGCCc -3'
miRNA:   3'- aUGGCCau-----CCUGgAUggCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 99656 0.66 0.952883
Target:  5'- cGCCGGggcccagAGGuucCCcGCCGccgAGGACCa -3'
miRNA:   3'- aUGGCCa------UCCu--GGaUGGCca-UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 38922 0.66 0.952883
Target:  5'- -cCCGGaGGGGCC-GCCGcGgcGGGCg -3'
miRNA:   3'- auGGCCaUCCUGGaUGGC-CauCCUGg -5'
9031 3' -56.3 NC_002512.2 + 4209 0.66 0.956648
Target:  5'- gAUCGGUGGGAgCgGCCGcgGGGAgCg -3'
miRNA:   3'- aUGGCCAUCCUgGaUGGCcaUCCUgG- -5'
9031 3' -56.3 NC_002512.2 + 45294 0.66 0.959509
Target:  5'- cGCgGGUcGGAcggaccgccgcCCUGCCGGcccgcgggucggAGGGCCg -3'
miRNA:   3'- aUGgCCAuCCU-----------GGAUGGCCa-----------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 95714 0.66 0.961567
Target:  5'- gGCCGGgagGGGAagacggcuccccgucCCcGCCGGccGGGACg -3'
miRNA:   3'- aUGGCCa--UCCU---------------GGaUGGCCa-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 57055 0.66 0.960203
Target:  5'- gACCGGgGGGcGCCgggcgaaCGGUAGGcgcACCg -3'
miRNA:   3'- aUGGCCaUCC-UGGaug----GCCAUCC---UGG- -5'
9031 3' -56.3 NC_002512.2 + 61453 0.66 0.960203
Target:  5'- cUGCUGGUggcccGGGACCUguACCGGgugAGcAUCg -3'
miRNA:   3'- -AUGGCCA-----UCCUGGA--UGGCCa--UCcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.