Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 40220 | 0.69 | 0.853157 |
Target: 5'- gUACCaGUAGGGCCgacGCCGGUGucGGcgcgucccgacgaaGCCg -3' miRNA: 3'- -AUGGcCAUCCUGGa--UGGCCAU--CC--------------UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 169203 | 0.69 | 0.854668 |
Target: 5'- aGCCaagugugGGaGGGACCUGCUcugugGGUGGGAgCCa -3' miRNA: 3'- aUGG-------CCaUCCUGGAUGG-----CCAUCCU-GG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 169273 | 0.69 | 0.854668 |
Target: 5'- aGCCaagugugGGaGGGACCUGCUcugugGGUGGGAgCCa -3' miRNA: 3'- aUGG-------CCaUCCUGGAUGG-----CCAUCCU-GG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 169377 | 0.69 | 0.855421 |
Target: 5'- aGCCaagugGGaGGGGCCUGCUcugugGGUGGGAgCCa -3' miRNA: 3'- aUGG-----CCaUCCUGGAUGG-----CCAUCCU-GG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 143684 | 0.69 | 0.855421 |
Target: 5'- aGCCGGgcgGGGugUcggGCaCGG-AGGGCCg -3' miRNA: 3'- aUGGCCa--UCCugGa--UG-GCCaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 69936 | 0.69 | 0.862847 |
Target: 5'- -cCCGGUAGG-UCU-CCGGUccGGCCa -3' miRNA: 3'- auGGCCAUCCuGGAuGGCCAucCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 136066 | 0.69 | 0.862847 |
Target: 5'- uUAUUGcGUGGGuCCgGCCGG-GGGGCCg -3' miRNA: 3'- -AUGGC-CAUCCuGGaUGGCCaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 198160 | 0.69 | 0.862847 |
Target: 5'- gGCCGGgucGGcGCCgGCCGGc-GGACCu -3' miRNA: 3'- aUGGCCau-CC-UGGaUGGCCauCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 4629 | 0.69 | 0.870078 |
Target: 5'- -gUCGGUGGuGACCUGgaCGGUggugGGGAUCg -3' miRNA: 3'- auGGCCAUC-CUGGAUg-GCCA----UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 95243 | 0.69 | 0.870078 |
Target: 5'- -uCCGGagGGGGCgU-CCGG-AGGGCCg -3' miRNA: 3'- auGGCCa-UCCUGgAuGGCCaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 195369 | 0.68 | 0.877109 |
Target: 5'- gUGCUGGUcGGcugccuggucACCUGCCGGgucGACCg -3' miRNA: 3'- -AUGGCCAuCC----------UGGAUGGCCaucCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 115872 | 0.68 | 0.877109 |
Target: 5'- -cCCGGUgccgcugcGGGGCCgacGgCGGcGGGACCa -3' miRNA: 3'- auGGCCA--------UCCUGGa--UgGCCaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 134754 | 0.68 | 0.877109 |
Target: 5'- cGCCGGggcGGACCguCCGGUucgucggcGGGCCc -3' miRNA: 3'- aUGGCCau-CCUGGauGGCCAu-------CCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 185505 | 0.68 | 0.877109 |
Target: 5'- cGCCGGgcugcgcgGGGGCCUGCCgcucuucgagggGGUGGccuACCg -3' miRNA: 3'- aUGGCCa-------UCCUGGAUGG------------CCAUCc--UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 222982 | 0.68 | 0.883936 |
Target: 5'- cGCCGGUcuuccucGACCUGCCGGggAGcGGCa -3' miRNA: 3'- aUGGCCAuc-----CUGGAUGGCCa-UC-CUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 226213 | 0.68 | 0.884607 |
Target: 5'- gACgGG-AGGACCU-CCGGaccgucggccgcgagGGGGCCg -3' miRNA: 3'- aUGgCCaUCCUGGAuGGCCa--------------UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 134522 | 0.68 | 0.895061 |
Target: 5'- cGCCGGUuacgacGGGACCUAUCcccucuucgacuuccUGGGGCCg -3' miRNA: 3'- aUGGCCA------UCCUGGAUGGcc-------------AUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 112587 | 0.68 | 0.89696 |
Target: 5'- --aCGGUgAGGGCgUAgaggaacucCUGGUAGGACCc -3' miRNA: 3'- augGCCA-UCCUGgAU---------GGCCAUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 127647 | 0.68 | 0.89696 |
Target: 5'- gAUCGGgucgcucGGACg-GCCGGUcgAGGGCCg -3' miRNA: 3'- aUGGCCau-----CCUGgaUGGCCA--UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 75726 | 0.68 | 0.89696 |
Target: 5'- aACCacagGGUAccGCCUACCGGaAGGACa -3' miRNA: 3'- aUGG----CCAUccUGGAUGGCCaUCCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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