Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 96516 | 0.67 | 0.925711 |
Target: 5'- cGCCGGaGGGAgCCgcGCCGGcggugugagccGGGGCCg -3' miRNA: 3'- aUGGCCaUCCU-GGa-UGGCCa----------UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 55033 | 0.67 | 0.925711 |
Target: 5'- aGCCGGUcGGGccGCCUACCGacGGGAg- -3' miRNA: 3'- aUGGCCA-UCC--UGGAUGGCcaUCCUgg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 142031 | 0.67 | 0.925711 |
Target: 5'- gGCCGGgggccGGcGACCcGCCGcG-AGGGCCc -3' miRNA: 3'- aUGGCCa----UC-CUGGaUGGC-CaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 60268 | 0.67 | 0.920945 |
Target: 5'- cACCu---GGACCUGCCGGccgaccugaagaacaAGGACCu -3' miRNA: 3'- aUGGccauCCUGGAUGGCCa--------------UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 108428 | 0.67 | 0.920404 |
Target: 5'- cGCCGcccGGGGCCggggGCCGGgGGGuCCc -3' miRNA: 3'- aUGGCca-UCCUGGa---UGGCCaUCCuGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 189005 | 0.67 | 0.920404 |
Target: 5'- cACCGGUA--ACU--CCGaGUAGGACCa -3' miRNA: 3'- aUGGCCAUccUGGauGGC-CAUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 94574 | 0.67 | 0.920404 |
Target: 5'- cGCCGaccucgGGGACC-GCCGGacaggcgaacUGGGGCCc -3' miRNA: 3'- aUGGCca----UCCUGGaUGGCC----------AUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 139803 | 0.67 | 0.914875 |
Target: 5'- gGCCGGcgGGGGCCUcgguCgGGUguccaAGGACg -3' miRNA: 3'- aUGGCCa-UCCUGGAu---GgCCA-----UCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 166462 | 0.67 | 0.914875 |
Target: 5'- cGCCGGgcucgAGGGCggggaCGGcGGGACCg -3' miRNA: 3'- aUGGCCa----UCCUGgaug-GCCaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 151884 | 0.67 | 0.914875 |
Target: 5'- cGCCGGcgauccgcGGAUCguuuCCGGUAGGcauGCCg -3' miRNA: 3'- aUGGCCau------CCUGGau--GGCCAUCC---UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 148435 | 0.67 | 0.914875 |
Target: 5'- cGCCGGgggAGGACggggGCCGGgccccccgcGGGACg -3' miRNA: 3'- aUGGCCa--UCCUGga--UGGCCa--------UCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 41539 | 0.67 | 0.91431 |
Target: 5'- gGCCuGGUAgagguugcGGGCCUGCaCGGUGGcgcgcagguucuuGACCu -3' miRNA: 3'- aUGG-CCAU--------CCUGGAUG-GCCAUC-------------CUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 70169 | 0.68 | 0.909123 |
Target: 5'- cGCCGGUAGuACCUcucCCGGUcccGGugCc -3' miRNA: 3'- aUGGCCAUCcUGGAu--GGCCAu--CCugG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 68515 | 0.68 | 0.909123 |
Target: 5'- aAgCGGUA-GACCUGCUGGcccAGGugCg -3' miRNA: 3'- aUgGCCAUcCUGGAUGGCCa--UCCugG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 221855 | 0.68 | 0.903151 |
Target: 5'- -cUCGGgaccGGGACCUcucggaGCgGGUGGGGCg -3' miRNA: 3'- auGGCCa---UCCUGGA------UGgCCAUCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 98536 | 0.68 | 0.903151 |
Target: 5'- cGCCGGcUGGGACCUcgcCCGGcguuccgcGGAUCc -3' miRNA: 3'- aUGGCC-AUCCUGGAu--GGCCau------CCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 112587 | 0.68 | 0.89696 |
Target: 5'- --aCGGUgAGGGCgUAgaggaacucCUGGUAGGACCc -3' miRNA: 3'- augGCCA-UCCUGgAU---------GGCCAUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 127647 | 0.68 | 0.89696 |
Target: 5'- gAUCGGgucgcucGGACg-GCCGGUcgAGGGCCg -3' miRNA: 3'- aUGGCCau-----CCUGgaUGGCCA--UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 43646 | 0.68 | 0.89696 |
Target: 5'- gACCGaGgaccGGGACCUcGCCcucGGUGGcGGCCg -3' miRNA: 3'- aUGGC-Ca---UCCUGGA-UGG---CCAUC-CUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 75726 | 0.68 | 0.89696 |
Target: 5'- aACCacagGGUAccGCCUACCGGaAGGACa -3' miRNA: 3'- aUGG----CCAUccUGGAUGGCCaUCCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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