miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 115734 0.66 0.948904
Target:  5'- gACCGGgcccGGGucguCCUcuGCCGGcugcuccuGGACCg -3'
miRNA:   3'- aUGGCCa---UCCu---GGA--UGGCCau------CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76987 0.66 0.946412
Target:  5'- gACCGG--GGACCgcucccguucaccgACCGG--GGACCg -3'
miRNA:   3'- aUGGCCauCCUGGa-------------UGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76939 0.66 0.944707
Target:  5'- gACCGG--GGACCgcucccgcugACCGaccgGGGACCg -3'
miRNA:   3'- aUGGCCauCCUGGa---------UGGCca--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 115869 0.66 0.942084
Target:  5'- cGCCGaGgcGGGCCcGCCGGacgacgacaaccggaUccGGGACCu -3'
miRNA:   3'- aUGGC-CauCCUGGaUGGCC---------------A--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 6333 0.66 0.940291
Target:  5'- cGCgGG-GGGACCgggcgcgggGCCGGc-GGGCCg -3'
miRNA:   3'- aUGgCCaUCCUGGa--------UGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 149500 0.66 0.940291
Target:  5'- gGCgGGUGGucaaaaGGCCgcgGCCGGagcGGGCCg -3'
miRNA:   3'- aUGgCCAUC------CUGGa--UGGCCau-CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 96276 0.66 0.940291
Target:  5'- cACCGGcaggcggGGGGgCUGCCGc--GGGCCg -3'
miRNA:   3'- aUGGCCa------UCCUgGAUGGCcauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 123804 0.66 0.940291
Target:  5'- gGCUGaagAGcGGCCUGUCGGUGGcGACCa -3'
miRNA:   3'- aUGGCca-UC-CUGGAUGGCCAUC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 95095 0.67 0.935654
Target:  5'- gACCGGcgucGGGCCcggggacGCgGGUGGGGCUc -3'
miRNA:   3'- aUGGCCau--CCUGGa------UGgCCAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 156439 0.67 0.935654
Target:  5'- gGCCGGgcugGGGGgCU-CCGGgggcggcggGGGACUc -3'
miRNA:   3'- aUGGCCa---UCCUgGAuGGCCa--------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 193452 0.67 0.935654
Target:  5'- cGCCGGUGgcgggagcGGGCCcuCCGGgacgAGGcCCa -3'
miRNA:   3'- aUGGCCAU--------CCUGGauGGCCa---UCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 229562 0.67 0.930794
Target:  5'- cGCCGGcggAGGAgCgcgcGCCGGgaGGGACg -3'
miRNA:   3'- aUGGCCa--UCCUgGa---UGGCCa-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 67963 0.67 0.930794
Target:  5'- cGCCGGUucgccguGGcguCC-GCCGGaggAGGGCCg -3'
miRNA:   3'- aUGGCCAu------CCu--GGaUGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 36413 0.67 0.930794
Target:  5'- gGCCGucguGGGCCUcgucCCGG-AGGGCCc -3'
miRNA:   3'- aUGGCcau-CCUGGAu---GGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 8827 0.67 0.930794
Target:  5'- cGCCGGagcuuGGGCCagacgggcucgcUGCCGGgcGGcACCc -3'
miRNA:   3'- aUGGCCau---CCUGG------------AUGGCCauCC-UGG- -5'
9031 3' -56.3 NC_002512.2 + 96393 0.67 0.930794
Target:  5'- aACCGG--GGACUcACCGGcggccucGGACCg -3'
miRNA:   3'- aUGGCCauCCUGGaUGGCCau-----CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 159 0.67 0.930794
Target:  5'- cGCCGGcggAGGAgCgcgcGCCGGgaGGGACg -3'
miRNA:   3'- aUGGCCa--UCCUgGa---UGGCCa-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 97979 0.67 0.930296
Target:  5'- cGCCGGUacgccccgGGGACCUucgacgagcacguGCUGGU-GG-CCg -3'
miRNA:   3'- aUGGCCA--------UCCUGGA-------------UGGCCAuCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 55033 0.67 0.925711
Target:  5'- aGCCGGUcGGGccGCCUACCGacGGGAg- -3'
miRNA:   3'- aUGGCCA-UCC--UGGAUGGCcaUCCUgg -5'
9031 3' -56.3 NC_002512.2 + 142031 0.67 0.925711
Target:  5'- gGCCGGgggccGGcGACCcGCCGcG-AGGGCCc -3'
miRNA:   3'- aUGGCCa----UC-CUGGaUGGC-CaUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.