miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 67963 0.67 0.930794
Target:  5'- cGCCGGUucgccguGGcguCC-GCCGGaggAGGGCCg -3'
miRNA:   3'- aUGGCCAu------CCu--GGaUGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 68515 0.68 0.909123
Target:  5'- aAgCGGUA-GACCUGCUGGcccAGGugCg -3'
miRNA:   3'- aUgGCCAUcCUGGAUGGCCa--UCCugG- -5'
9031 3' -56.3 NC_002512.2 + 69117 0.66 0.948904
Target:  5'- cGCCGGccccgcuccGGGACCU-CCGuGcccGGGGCCg -3'
miRNA:   3'- aUGGCCa--------UCCUGGAuGGC-Ca--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 69936 0.69 0.862847
Target:  5'- -cCCGGUAGG-UCU-CCGGUccGGCCa -3'
miRNA:   3'- auGGCCAUCCuGGAuGGCCAucCUGG- -5'
9031 3' -56.3 NC_002512.2 + 70169 0.68 0.909123
Target:  5'- cGCCGGUAGuACCUcucCCGGUcccGGugCc -3'
miRNA:   3'- aUGGCCAUCcUGGAu--GGCCAu--CCugG- -5'
9031 3' -56.3 NC_002512.2 + 70672 0.75 0.539268
Target:  5'- gGCCGGgagGGGACUUcCCGG--GGACCg -3'
miRNA:   3'- aUGGCCa--UCCUGGAuGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 72779 0.71 0.762743
Target:  5'- cGCCGGgaGGGACgUcGCCGGgacGGGCCc -3'
miRNA:   3'- aUGGCCa-UCCUGgA-UGGCCau-CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 75726 0.68 0.89696
Target:  5'- aACCacagGGUAccGCCUACCGGaAGGACa -3'
miRNA:   3'- aUGG----CCAUccUGGAUGGCCaUCCUGg -5'
9031 3' -56.3 NC_002512.2 + 76230 0.71 0.744176
Target:  5'- cUACCGGUAGGuuCCUAuaGGUAGGu-- -3'
miRNA:   3'- -AUGGCCAUCCu-GGAUggCCAUCCugg -5'
9031 3' -56.3 NC_002512.2 + 76257 0.89 0.093057
Target:  5'- cUACCGGUAGGuCCUACCGGUAGGuauauaguACCc -3'
miRNA:   3'- -AUGGCCAUCCuGGAUGGCCAUCC--------UGG- -5'
9031 3' -56.3 NC_002512.2 + 76864 0.66 0.949311
Target:  5'- gACCGG--GGACCgcucccgccgacccgACCGG--GGACCg -3'
miRNA:   3'- aUGGCCauCCUGGa--------------UGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76939 0.66 0.944707
Target:  5'- gACCGG--GGACCgcucccgcugACCGaccgGGGACCg -3'
miRNA:   3'- aUGGCCauCCUGGa---------UGGCca--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76987 0.66 0.946412
Target:  5'- gACCGG--GGACCgcucccguucaccgACCGG--GGACCg -3'
miRNA:   3'- aUGGCCauCCUGGa-------------UGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 92641 0.66 0.956648
Target:  5'- cGCCGGcgccGGGACCcGCgCGGauccGGGACg -3'
miRNA:   3'- aUGGCCa---UCCUGGaUG-GCCa---UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 92682 0.74 0.568317
Target:  5'- cGCCGGgcGcGCCgcccACCGGgcGGACCg -3'
miRNA:   3'- aUGGCCauCcUGGa---UGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 93464 0.67 0.925711
Target:  5'- cGCCGGgaucguggcGGaGACCUACUucggGGUAucGGACCu -3'
miRNA:   3'- aUGGCCa--------UC-CUGGAUGG----CCAU--CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 94574 0.67 0.920404
Target:  5'- cGCCGaccucgGGGACC-GCCGGacaggcgaacUGGGGCCc -3'
miRNA:   3'- aUGGCca----UCCUGGaUGGCC----------AUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 95095 0.67 0.935654
Target:  5'- gACCGGcgucGGGCCcggggacGCgGGUGGGGCUc -3'
miRNA:   3'- aUGGCCau--CCUGGa------UGgCCAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 95243 0.69 0.870078
Target:  5'- -uCCGGagGGGGCgU-CCGG-AGGGCCg -3'
miRNA:   3'- auGGCCa-UCCUGgAuGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 95714 0.66 0.961567
Target:  5'- gGCCGGgagGGGAagacggcuccccgucCCcGCCGGccGGGACg -3'
miRNA:   3'- aUGGCCa--UCCU---------------GGaUGGCCa-UCCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.