Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 76987 | 0.66 | 0.946412 |
Target: 5'- gACCGG--GGACCgcucccguucaccgACCGG--GGACCg -3' miRNA: 3'- aUGGCCauCCUGGa-------------UGGCCauCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 101955 | 0.66 | 0.948904 |
Target: 5'- aGCUGGUGgcccgcGGGCCcGCCGGcGGGcucgugGCCg -3' miRNA: 3'- aUGGCCAU------CCUGGaUGGCCaUCC------UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 115734 | 0.66 | 0.948904 |
Target: 5'- gACCGGgcccGGGucguCCUcuGCCGGcugcuccuGGACCg -3' miRNA: 3'- aUGGCCa---UCCu---GGA--UGGCCau------CCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 29154 | 0.66 | 0.948904 |
Target: 5'- -cCCGGUAcgacccguucGGACC-GCCGGgcGGcaGCCc -3' miRNA: 3'- auGGCCAU----------CCUGGaUGGCCauCC--UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 95714 | 0.66 | 0.961567 |
Target: 5'- gGCCGGgagGGGAagacggcuccccgucCCcGCCGGccGGGACg -3' miRNA: 3'- aUGGCCa--UCCU---------------GGaUGGCCa-UCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 38922 | 0.66 | 0.952883 |
Target: 5'- -cCCGGaGGGGCC-GCCGcGgcGGGCg -3' miRNA: 3'- auGGCCaUCCUGGaUGGC-CauCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 76864 | 0.66 | 0.949311 |
Target: 5'- gACCGG--GGACCgcucccgccgacccgACCGG--GGACCg -3' miRNA: 3'- aUGGCCauCCUGGa--------------UGGCCauCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 69117 | 0.66 | 0.948904 |
Target: 5'- cGCCGGccccgcuccGGGACCU-CCGuGcccGGGGCCg -3' miRNA: 3'- aUGGCCa--------UCCUGGAuGGC-Ca--UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 67963 | 0.67 | 0.930794 |
Target: 5'- cGCCGGUucgccguGGcguCC-GCCGGaggAGGGCCg -3' miRNA: 3'- aUGGCCAu------CCu--GGaUGGCCa--UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 36413 | 0.67 | 0.930794 |
Target: 5'- gGCCGucguGGGCCUcgucCCGG-AGGGCCc -3' miRNA: 3'- aUGGCcau-CCUGGAu---GGCCaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 8827 | 0.67 | 0.930794 |
Target: 5'- cGCCGGagcuuGGGCCagacgggcucgcUGCCGGgcGGcACCc -3' miRNA: 3'- aUGGCCau---CCUGG------------AUGGCCauCC-UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 97979 | 0.67 | 0.930296 |
Target: 5'- cGCCGGUacgccccgGGGACCUucgacgagcacguGCUGGU-GG-CCg -3' miRNA: 3'- aUGGCCA--------UCCUGGA-------------UGGCCAuCCuGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 142031 | 0.67 | 0.925711 |
Target: 5'- gGCCGGgggccGGcGACCcGCCGcG-AGGGCCc -3' miRNA: 3'- aUGGCCa----UC-CUGGaUGGC-CaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 55033 | 0.67 | 0.925711 |
Target: 5'- aGCCGGUcGGGccGCCUACCGacGGGAg- -3' miRNA: 3'- aUGGCCA-UCC--UGGAUGGCcaUCCUgg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 60268 | 0.67 | 0.920945 |
Target: 5'- cACCu---GGACCUGCCGGccgaccugaagaacaAGGACCu -3' miRNA: 3'- aUGGccauCCUGGAUGGCCa--------------UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 189005 | 0.67 | 0.920404 |
Target: 5'- cACCGGUA--ACU--CCGaGUAGGACCa -3' miRNA: 3'- aUGGCCAUccUGGauGGC-CAUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 139803 | 0.67 | 0.914875 |
Target: 5'- gGCCGGcgGGGGCCUcgguCgGGUguccaAGGACg -3' miRNA: 3'- aUGGCCa-UCCUGGAu---GgCCA-----UCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 41539 | 0.67 | 0.91431 |
Target: 5'- gGCCuGGUAgagguugcGGGCCUGCaCGGUGGcgcgcagguucuuGACCu -3' miRNA: 3'- aUGG-CCAU--------CCUGGAUG-GCCAUC-------------CUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 95095 | 0.67 | 0.935654 |
Target: 5'- gACCGGcgucGGGCCcggggacGCgGGUGGGGCUc -3' miRNA: 3'- aUGGCCau--CCUGGa------UGgCCAUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 96393 | 0.67 | 0.930794 |
Target: 5'- aACCGG--GGACUcACCGGcggccucGGACCg -3' miRNA: 3'- aUGGCCauCCUGGaUGGCCau-----CCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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