miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 115734 0.66 0.948904
Target:  5'- gACCGGgcccGGGucguCCUcuGCCGGcugcuccuGGACCg -3'
miRNA:   3'- aUGGCCa---UCCu---GGA--UGGCCau------CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76864 0.66 0.949311
Target:  5'- gACCGG--GGACCgcucccgccgacccgACCGG--GGACCg -3'
miRNA:   3'- aUGGCCauCCUGGa--------------UGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 57055 0.66 0.960203
Target:  5'- gACCGGgGGGcGCCgggcgaaCGGUAGGcgcACCg -3'
miRNA:   3'- aUGGCCaUCC-UGGaug----GCCAUCC---UGG- -5'
9031 3' -56.3 NC_002512.2 + 61453 0.66 0.960203
Target:  5'- cUGCUGGUggcccGGGACCUguACCGGgugAGcAUCg -3'
miRNA:   3'- -AUGGCCA-----UCCUGGA--UGGCCa--UCcUGG- -5'
9031 3' -56.3 NC_002512.2 + 38922 0.66 0.952883
Target:  5'- -cCCGGaGGGGCC-GCCGcGgcGGGCg -3'
miRNA:   3'- auGGCCaUCCUGGaUGGC-CauCCUGg -5'
9031 3' -56.3 NC_002512.2 + 45294 0.66 0.959509
Target:  5'- cGCgGGUcGGAcggaccgccgcCCUGCCGGcccgcgggucggAGGGCCg -3'
miRNA:   3'- aUGgCCAuCCU-----------GGAUGGCCa-----------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 4209 0.66 0.956648
Target:  5'- gAUCGGUGGGAgCgGCCGcgGGGAgCg -3'
miRNA:   3'- aUGGCCAUCCUgGaUGGCcaUCCUgG- -5'
9031 3' -56.3 NC_002512.2 + 114031 0.66 0.960203
Target:  5'- cACCGGgcgcgguGGACgUAgaGGgcGGGCCc -3'
miRNA:   3'- aUGGCCau-----CCUGgAUggCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 92641 0.66 0.956648
Target:  5'- cGCCGGcgccGGGACCcGCgCGGauccGGGACg -3'
miRNA:   3'- aUGGCCa---UCCUGGaUG-GCCa---UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 122236 0.66 0.959857
Target:  5'- gACCGGUcuGACCUACagcuCGGUcuuccccGGcGGCCg -3'
miRNA:   3'- aUGGCCAucCUGGAUG----GCCA-------UC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 95714 0.66 0.961567
Target:  5'- gGCCGGgagGGGAagacggcuccccgucCCcGCCGGccGGGACg -3'
miRNA:   3'- aUGGCCa--UCCU---------------GGaUGGCCa-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 99656 0.66 0.952883
Target:  5'- cGCCGGggcccagAGGuucCCcGCCGccgAGGACCa -3'
miRNA:   3'- aUGGCCa------UCCu--GGaUGGCca-UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 169503 0.66 0.960203
Target:  5'- aUAUgGGUGGGGCggGCgUGGgaGGGACCu -3'
miRNA:   3'- -AUGgCCAUCCUGgaUG-GCCa-UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 101955 0.66 0.948904
Target:  5'- aGCUGGUGgcccgcGGGCCcGCCGGcGGGcucgugGCCg -3'
miRNA:   3'- aUGGCCAU------CCUGGaUGGCCaUCC------UGG- -5'
9031 3' -56.3 NC_002512.2 + 96276 0.66 0.940291
Target:  5'- cACCGGcaggcggGGGGgCUGCCGc--GGGCCg -3'
miRNA:   3'- aUGGCCa------UCCUgGAUGGCcauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 29154 0.66 0.948904
Target:  5'- -cCCGGUAcgacccguucGGACC-GCCGGgcGGcaGCCc -3'
miRNA:   3'- auGGCCAU----------CCUGGaUGGCCauCC--UGG- -5'
9031 3' -56.3 NC_002512.2 + 69117 0.66 0.948904
Target:  5'- cGCCGGccccgcuccGGGACCU-CCGuGcccGGGGCCg -3'
miRNA:   3'- aUGGCCa--------UCCUGGAuGGC-Ca--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76939 0.66 0.944707
Target:  5'- gACCGG--GGACCgcucccgcugACCGaccgGGGACCg -3'
miRNA:   3'- aUGGCCauCCUGGa---------UGGCca--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76987 0.66 0.946412
Target:  5'- gACCGG--GGACCgcucccguucaccgACCGG--GGACCg -3'
miRNA:   3'- aUGGCCauCCUGGa-------------UGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 6333 0.66 0.940291
Target:  5'- cGCgGG-GGGACCgggcgcgggGCCGGc-GGGCCg -3'
miRNA:   3'- aUGgCCaUCCUGGa--------UGGCCauCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.