miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 159 0.67 0.930794
Target:  5'- cGCCGGcggAGGAgCgcgcGCCGGgaGGGACg -3'
miRNA:   3'- aUGGCCa--UCCUgGa---UGGCCa-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 2809 0.72 0.686542
Target:  5'- gGCCGGcGGGACCcgGCgCGGgcgcGGGCCc -3'
miRNA:   3'- aUGGCCaUCCUGGa-UG-GCCau--CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 4209 0.66 0.956648
Target:  5'- gAUCGGUGGGAgCgGCCGcgGGGAgCg -3'
miRNA:   3'- aUGGCCAUCCUgGaUGGCcaUCCUgG- -5'
9031 3' -56.3 NC_002512.2 + 4629 0.69 0.870078
Target:  5'- -gUCGGUGGuGACCUGgaCGGUggugGGGAUCg -3'
miRNA:   3'- auGGCCAUC-CUGGAUg-GCCA----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 6333 0.66 0.940291
Target:  5'- cGCgGG-GGGACCgggcgcgggGCCGGc-GGGCCg -3'
miRNA:   3'- aUGgCCaUCCUGGa--------UGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 8827 0.67 0.930794
Target:  5'- cGCCGGagcuuGGGCCagacgggcucgcUGCCGGgcGGcACCc -3'
miRNA:   3'- aUGGCCau---CCUGG------------AUGGCCauCC-UGG- -5'
9031 3' -56.3 NC_002512.2 + 26239 0.71 0.780877
Target:  5'- gACCGGUAuGGACgUGCUGcugGGGACa -3'
miRNA:   3'- aUGGCCAU-CCUGgAUGGCca-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 29154 0.66 0.948904
Target:  5'- -cCCGGUAcgacccguucGGACC-GCCGGgcGGcaGCCc -3'
miRNA:   3'- auGGCCAU----------CCUGGaUGGCCauCC--UGG- -5'
9031 3' -56.3 NC_002512.2 + 36413 0.67 0.930794
Target:  5'- gGCCGucguGGGCCUcgucCCGG-AGGGCCc -3'
miRNA:   3'- aUGGCcau-CCUGGAu---GGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 36914 0.76 0.492076
Target:  5'- cGCCGG-AGGACCaAgCGGgAGGACCc -3'
miRNA:   3'- aUGGCCaUCCUGGaUgGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 38922 0.66 0.952883
Target:  5'- -cCCGGaGGGGCC-GCCGcGgcGGGCg -3'
miRNA:   3'- auGGCCaUCCUGGaUGGC-CauCCUGg -5'
9031 3' -56.3 NC_002512.2 + 40220 0.69 0.853157
Target:  5'- gUACCaGUAGGGCCgacGCCGGUGucGGcgcgucccgacgaaGCCg -3'
miRNA:   3'- -AUGGcCAUCCUGGa--UGGCCAU--CC--------------UGG- -5'
9031 3' -56.3 NC_002512.2 + 41539 0.67 0.91431
Target:  5'- gGCCuGGUAgagguugcGGGCCUGCaCGGUGGcgcgcagguucuuGACCu -3'
miRNA:   3'- aUGG-CCAU--------CCUGGAUG-GCCAUC-------------CUGG- -5'
9031 3' -56.3 NC_002512.2 + 43646 0.68 0.89696
Target:  5'- gACCGaGgaccGGGACCUcGCCcucGGUGGcGGCCg -3'
miRNA:   3'- aUGGC-Ca---UCCUGGA-UGG---CCAUC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 45294 0.66 0.959509
Target:  5'- cGCgGGUcGGAcggaccgccgcCCUGCCGGcccgcgggucggAGGGCCg -3'
miRNA:   3'- aUGgCCAuCCU-----------GGAUGGCCa-----------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 55033 0.67 0.925711
Target:  5'- aGCCGGUcGGGccGCCUACCGacGGGAg- -3'
miRNA:   3'- aUGGCCA-UCC--UGGAUGGCcaUCCUgg -5'
9031 3' -56.3 NC_002512.2 + 57055 0.66 0.960203
Target:  5'- gACCGGgGGGcGCCgggcgaaCGGUAGGcgcACCg -3'
miRNA:   3'- aUGGCCaUCC-UGGaug----GCCAUCC---UGG- -5'
9031 3' -56.3 NC_002512.2 + 57854 0.77 0.429455
Target:  5'- gGCgGGUGGGGCgcaugCUGCCGGccGGACCg -3'
miRNA:   3'- aUGgCCAUCCUG-----GAUGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 60268 0.67 0.920945
Target:  5'- cACCu---GGACCUGCCGGccgaccugaagaacaAGGACCu -3'
miRNA:   3'- aUGGccauCCUGGAUGGCCa--------------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 61453 0.66 0.960203
Target:  5'- cUGCUGGUggcccGGGACCUguACCGGgugAGcAUCg -3'
miRNA:   3'- -AUGGCCA-----UCCUGGA--UGGCCa--UCcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.