miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 153631 1.1 0.004078
Target:  5'- cUACCGGUAGGACCUACCGGUAGGACCu -3'
miRNA:   3'- -AUGGCCAUCCUGGAUGGCCAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76257 0.89 0.093057
Target:  5'- cUACCGGUAGGuCCUACCGGUAGGuauauaguACCc -3'
miRNA:   3'- -AUGGCCAUCCuGGAUGGCCAUCC--------UGG- -5'
9031 3' -56.3 NC_002512.2 + 158545 0.84 0.174155
Target:  5'- gGCUGGU-GGACCUGCUGGUGGG-CCg -3'
miRNA:   3'- aUGGCCAuCCUGGAUGGCCAUCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 220310 0.79 0.326707
Target:  5'- cGCCGG-GGGGCCggggGCCGGgcuccggGGGGCCg -3'
miRNA:   3'- aUGGCCaUCCUGGa---UGGCCa------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 132106 0.79 0.333929
Target:  5'- gACCGGggcucgAGGGCCgcCCGGUAGG-CCg -3'
miRNA:   3'- aUGGCCa-----UCCUGGauGGCCAUCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 153657 0.79 0.333929
Target:  5'- cUACCuaUAGGaACCUACCGGUAGGuACCu -3'
miRNA:   3'- -AUGGccAUCC-UGGAUGGCCAUCC-UGG- -5'
9031 3' -56.3 NC_002512.2 + 57854 0.77 0.429455
Target:  5'- gGCgGGUGGGGCgcaugCUGCCGGccGGACCg -3'
miRNA:   3'- aUGgCCAUCCUG-----GAUGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 36914 0.76 0.492076
Target:  5'- cGCCGG-AGGACCaAgCGGgAGGACCc -3'
miRNA:   3'- aUGGCCaUCCUGGaUgGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 70672 0.75 0.539268
Target:  5'- gGCCGGgagGGGACUUcCCGG--GGACCg -3'
miRNA:   3'- aUGGCCa--UCCUGGAuGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 92682 0.74 0.568317
Target:  5'- cGCCGGgcGcGCCgcccACCGGgcGGACCg -3'
miRNA:   3'- aUGGCCauCcUGGa---UGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 225794 0.74 0.578092
Target:  5'- cGCCGGccGGGCCgcgggcgGCCGGguggccUGGGACCu -3'
miRNA:   3'- aUGGCCauCCUGGa------UGGCC------AUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 159951 0.74 0.607606
Target:  5'- gGCCGGaccGGaGACCUACCGGga-GACCu -3'
miRNA:   3'- aUGGCCa--UC-CUGGAUGGCCaucCUGG- -5'
9031 3' -56.3 NC_002512.2 + 224527 0.73 0.647165
Target:  5'- aGCCGG-AGGACC-ACaGGUcccgGGGACCa -3'
miRNA:   3'- aUGGCCaUCCUGGaUGgCCA----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 110564 0.73 0.666906
Target:  5'- cGCgCGGgAGGuCCUGCCGGgucAGGAUCu -3'
miRNA:   3'- aUG-GCCaUCCuGGAUGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 2809 0.72 0.686542
Target:  5'- gGCCGGcGGGACCcgGCgCGGgcgcGGGCCc -3'
miRNA:   3'- aUGGCCaUCCUGGa-UG-GCCau--CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 99031 0.72 0.696301
Target:  5'- -cCCGGUgGGGGCCUcgcccgaccGCCGGUAcucGACCg -3'
miRNA:   3'- auGGCCA-UCCUGGA---------UGGCCAUc--CUGG- -5'
9031 3' -56.3 NC_002512.2 + 128189 0.72 0.706009
Target:  5'- cGCCGagcGGGCC-GCCGGcGGGACCg -3'
miRNA:   3'- aUGGCcauCCUGGaUGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 109841 0.72 0.715659
Target:  5'- cGCCGGgcgucgGGGACCggcgugGCggCGGUgGGGACCu -3'
miRNA:   3'- aUGGCCa-----UCCUGGa-----UG--GCCA-UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 210830 0.71 0.734751
Target:  5'- -uCCGGUGGGACacgGCCGucugGGGGCUg -3'
miRNA:   3'- auGGCCAUCCUGga-UGGCca--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76230 0.71 0.744176
Target:  5'- cUACCGGUAGGuuCCUAuaGGUAGGu-- -3'
miRNA:   3'- -AUGGCCAUCCu-GGAUggCCAUCCugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.