miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 95243 0.69 0.870078
Target:  5'- -uCCGGagGGGGCgU-CCGG-AGGGCCg -3'
miRNA:   3'- auGGCCa-UCCUGgAuGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 102868 0.69 0.832036
Target:  5'- gACCGGgGGGacGCCUACgGG--GGACCc -3'
miRNA:   3'- aUGGCCaUCC--UGGAUGgCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 130679 0.69 0.832036
Target:  5'- gACCGGgacGGGCUgcuCgUGGUGGGGCCc -3'
miRNA:   3'- aUGGCCau-CCUGGau-G-GCCAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 40220 0.69 0.853157
Target:  5'- gUACCaGUAGGGCCgacGCCGGUGucGGcgcgucccgacgaaGCCg -3'
miRNA:   3'- -AUGGcCAUCCUGGa--UGGCCAU--CC--------------UGG- -5'
9031 3' -56.3 NC_002512.2 + 169203 0.69 0.854668
Target:  5'- aGCCaagugugGGaGGGACCUGCUcugugGGUGGGAgCCa -3'
miRNA:   3'- aUGG-------CCaUCCUGGAUGG-----CCAUCCU-GG- -5'
9031 3' -56.3 NC_002512.2 + 169273 0.69 0.854668
Target:  5'- aGCCaagugugGGaGGGACCUGCUcugugGGUGGGAgCCa -3'
miRNA:   3'- aUGG-------CCaUCCUGGAUGG-----CCAUCCU-GG- -5'
9031 3' -56.3 NC_002512.2 + 169377 0.69 0.855421
Target:  5'- aGCCaagugGGaGGGGCCUGCUcugugGGUGGGAgCCa -3'
miRNA:   3'- aUGG-----CCaUCCUGGAUGG-----CCAUCCU-GG- -5'
9031 3' -56.3 NC_002512.2 + 136066 0.69 0.862847
Target:  5'- uUAUUGcGUGGGuCCgGCCGG-GGGGCCg -3'
miRNA:   3'- -AUGGC-CAUCCuGGaUGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 69936 0.69 0.862847
Target:  5'- -cCCGGUAGG-UCU-CCGGUccGGCCa -3'
miRNA:   3'- auGGCCAUCCuGGAuGGCCAucCUGG- -5'
9031 3' -56.3 NC_002512.2 + 123728 0.7 0.798513
Target:  5'- gACCuGUGcucGGACCUGCgGGgucGGACCu -3'
miRNA:   3'- aUGGcCAU---CCUGGAUGgCCau-CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 135217 0.71 0.780877
Target:  5'- gGCCGG-GGGGCCccCCGGccccGGGCCg -3'
miRNA:   3'- aUGGCCaUCCUGGauGGCCau--CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 26239 0.71 0.780877
Target:  5'- gACCGGUAuGGACgUGCUGcugGGGACa -3'
miRNA:   3'- aUGGCCAU-CCUGgAUGGCca-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 57854 0.77 0.429455
Target:  5'- gGCgGGUGGGGCgcaugCUGCCGGccGGACCg -3'
miRNA:   3'- aUGgCCAUCCUG-----GAUGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 36914 0.76 0.492076
Target:  5'- cGCCGG-AGGACCaAgCGGgAGGACCc -3'
miRNA:   3'- aUGGCCaUCCUGGaUgGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 70672 0.75 0.539268
Target:  5'- gGCCGGgagGGGACUUcCCGG--GGACCg -3'
miRNA:   3'- aUGGCCa--UCCUGGAuGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 110564 0.73 0.666906
Target:  5'- cGCgCGGgAGGuCCUGCCGGgucAGGAUCu -3'
miRNA:   3'- aUG-GCCaUCCuGGAUGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 2809 0.72 0.686542
Target:  5'- gGCCGGcGGGACCcgGCgCGGgcgcGGGCCc -3'
miRNA:   3'- aUGGCCaUCCUGGa-UG-GCCau--CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 128189 0.72 0.706009
Target:  5'- cGCCGagcGGGCC-GCCGGcGGGACCg -3'
miRNA:   3'- aUGGCcauCCUGGaUGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 76230 0.71 0.744176
Target:  5'- cUACCGGUAGGuuCCUAuaGGUAGGu-- -3'
miRNA:   3'- -AUGGCCAUCCu-GGAUggCCAUCCugg -5'
9031 3' -56.3 NC_002512.2 + 72779 0.71 0.762743
Target:  5'- cGCCGGgaGGGACgUcGCCGGgacGGGCCc -3'
miRNA:   3'- aUGGCCa-UCCUGgA-UGGCCau-CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.