Results 1 - 20 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 95714 | 0.66 | 0.961567 |
Target: 5'- gGCCGGgagGGGAagacggcuccccgucCCcGCCGGccGGGACg -3' miRNA: 3'- aUGGCCa--UCCU---------------GGaUGGCCa-UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 93464 | 0.67 | 0.925711 |
Target: 5'- cGCCGGgaucguggcGGaGACCUACUucggGGUAucGGACCu -3' miRNA: 3'- aUGGCCa--------UC-CUGGAUGG----CCAU--CCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 108428 | 0.67 | 0.920404 |
Target: 5'- cGCCGcccGGGGCCggggGCCGGgGGGuCCc -3' miRNA: 3'- aUGGCca-UCCUGGa---UGGCCaUCCuGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 153631 | 1.1 | 0.004078 |
Target: 5'- cUACCGGUAGGACCUACCGGUAGGACCu -3' miRNA: 3'- -AUGGCCAUCCUGGAUGGCCAUCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 186824 | 0.66 | 0.956648 |
Target: 5'- gACCGGUgccucggcgAGGcCCUGCgCGucgccgAGGACCu -3' miRNA: 3'- aUGGCCA---------UCCuGGAUG-GCca----UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 97071 | 0.66 | 0.956648 |
Target: 5'- gUGCUGGgugcGGAUCUucuuCCGGaAGGACg -3' miRNA: 3'- -AUGGCCau--CCUGGAu---GGCCaUCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 220776 | 0.66 | 0.952883 |
Target: 5'- -gUCGGguccauGGACCUGCUGG--GGAUCg -3' miRNA: 3'- auGGCCau----CCUGGAUGGCCauCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 115869 | 0.66 | 0.942084 |
Target: 5'- cGCCGaGgcGGGCCcGCCGGacgacgacaaccggaUccGGGACCu -3' miRNA: 3'- aUGGC-CauCCUGGaUGGCC---------------A--UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 193452 | 0.67 | 0.935654 |
Target: 5'- cGCCGGUGgcgggagcGGGCCcuCCGGgacgAGGcCCa -3' miRNA: 3'- aUGGCCAU--------CCUGGauGGCCa---UCCuGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 96516 | 0.67 | 0.925711 |
Target: 5'- cGCCGGaGGGAgCCgcGCCGGcggugugagccGGGGCCg -3' miRNA: 3'- aUGGCCaUCCU-GGa-UGGCCa----------UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 229562 | 0.67 | 0.930794 |
Target: 5'- cGCCGGcggAGGAgCgcgcGCCGGgaGGGACg -3' miRNA: 3'- aUGGCCa--UCCUgGa---UGGCCa-UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 149500 | 0.66 | 0.940291 |
Target: 5'- gGCgGGUGGucaaaaGGCCgcgGCCGGagcGGGCCg -3' miRNA: 3'- aUGgCCAUC------CUGGa--UGGCCau-CCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 114031 | 0.66 | 0.960203 |
Target: 5'- cACCGGgcgcgguGGACgUAgaGGgcGGGCCc -3' miRNA: 3'- aUGGCCau-----CCUGgAUggCCauCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 159 | 0.67 | 0.930794 |
Target: 5'- cGCCGGcggAGGAgCgcgcGCCGGgaGGGACg -3' miRNA: 3'- aUGGCCa--UCCUgGa---UGGCCa-UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 92641 | 0.66 | 0.956648 |
Target: 5'- cGCCGGcgccGGGACCcGCgCGGauccGGGACg -3' miRNA: 3'- aUGGCCa---UCCUGGaUG-GCCa---UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 123804 | 0.66 | 0.940291 |
Target: 5'- gGCUGaagAGcGGCCUGUCGGUGGcGACCa -3' miRNA: 3'- aUGGCca-UC-CUGGAUGGCCAUC-CUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 119326 | 0.67 | 0.925711 |
Target: 5'- -cCCGGcAGGACCUcCCGcGcgGGGGCg -3' miRNA: 3'- auGGCCaUCCUGGAuGGC-Ca-UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 94574 | 0.67 | 0.920404 |
Target: 5'- cGCCGaccucgGGGACC-GCCGGacaggcgaacUGGGGCCc -3' miRNA: 3'- aUGGCca----UCCUGGaUGGCC----------AUCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 189666 | 0.66 | 0.956648 |
Target: 5'- cACCGGcgucGGcCCUACUGGUaccGGcGGCCc -3' miRNA: 3'- aUGGCCau--CCuGGAUGGCCA---UC-CUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 158287 | 0.66 | 0.952883 |
Target: 5'- aGCUGG-AGGGCgUGCCGGcccccaAGG-CCg -3' miRNA: 3'- aUGGCCaUCCUGgAUGGCCa-----UCCuGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home