miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 229562 0.67 0.930794
Target:  5'- cGCCGGcggAGGAgCgcgcGCCGGgaGGGACg -3'
miRNA:   3'- aUGGCCa--UCCUgGa---UGGCCa-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 227968 0.71 0.762743
Target:  5'- aGCCGGagaggAGGGCC--CCGGcgccgAGGGCCg -3'
miRNA:   3'- aUGGCCa----UCCUGGauGGCCa----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 226213 0.68 0.884607
Target:  5'- gACgGG-AGGACCU-CCGGaccgucggccgcgagGGGGCCg -3'
miRNA:   3'- aUGgCCaUCCUGGAuGGCCa--------------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 225981 0.71 0.744176
Target:  5'- gACCGGUcucgggggcaagGGGACCgggacGCCGGUgcugacuccgAGGACg -3'
miRNA:   3'- aUGGCCA------------UCCUGGa----UGGCCA----------UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 225794 0.74 0.578092
Target:  5'- cGCCGGccGGGCCgcgggcgGCCGGguggccUGGGACCu -3'
miRNA:   3'- aUGGCCauCCUGGa------UGGCC------AUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 224527 0.73 0.647165
Target:  5'- aGCCGG-AGGACC-ACaGGUcccgGGGACCa -3'
miRNA:   3'- aUGGCCaUCCUGGaUGgCCA----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 222982 0.68 0.883936
Target:  5'- cGCCGGUcuuccucGACCUGCCGGggAGcGGCa -3'
miRNA:   3'- aUGGCCAuc-----CUGGAUGGCCa-UC-CUGg -5'
9031 3' -56.3 NC_002512.2 + 221855 0.68 0.903151
Target:  5'- -cUCGGgaccGGGACCUcucggaGCgGGUGGGGCg -3'
miRNA:   3'- auGGCCa---UCCUGGA------UGgCCAUCCUGg -5'
9031 3' -56.3 NC_002512.2 + 220776 0.66 0.952883
Target:  5'- -gUCGGguccauGGACCUGCUGG--GGAUCg -3'
miRNA:   3'- auGGCCau----CCUGGAUGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 220310 0.79 0.326707
Target:  5'- cGCCGG-GGGGCCggggGCCGGgcuccggGGGGCCg -3'
miRNA:   3'- aUGGCCaUCCUGGa---UGGCCa------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 210830 0.71 0.734751
Target:  5'- -uCCGGUGGGACacgGCCGucugGGGGCUg -3'
miRNA:   3'- auGGCCAUCCUGga-UGGCca--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 201849 0.7 0.807124
Target:  5'- gGCCGGcagcucgccUGGGGCCUG-CGGUccgAGGACg -3'
miRNA:   3'- aUGGCC---------AUCCUGGAUgGCCA---UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 198160 0.69 0.862847
Target:  5'- gGCCGGgucGGcGCCgGCCGGc-GGACCu -3'
miRNA:   3'- aUGGCCau-CC-UGGaUGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 195369 0.68 0.877109
Target:  5'- gUGCUGGUcGGcugccuggucACCUGCCGGgucGACCg -3'
miRNA:   3'- -AUGGCCAuCC----------UGGAUGGCCaucCUGG- -5'
9031 3' -56.3 NC_002512.2 + 193452 0.67 0.935654
Target:  5'- cGCCGGUGgcgggagcGGGCCcuCCGGgacgAGGcCCa -3'
miRNA:   3'- aUGGCCAU--------CCUGGauGGCCa---UCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 189666 0.66 0.956648
Target:  5'- cACCGGcgucGGcCCUACUGGUaccGGcGGCCc -3'
miRNA:   3'- aUGGCCau--CCuGGAUGGCCA---UC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 189005 0.67 0.920404
Target:  5'- cACCGGUA--ACU--CCGaGUAGGACCa -3'
miRNA:   3'- aUGGCCAUccUGGauGGC-CAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 186824 0.66 0.956648
Target:  5'- gACCGGUgccucggcgAGGcCCUGCgCGucgccgAGGACCu -3'
miRNA:   3'- aUGGCCA---------UCCuGGAUG-GCca----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 185505 0.68 0.877109
Target:  5'- cGCCGGgcugcgcgGGGGCCUGCCgcucuucgagggGGUGGccuACCg -3'
miRNA:   3'- aUGGCCa-------UCCUGGAUGG------------CCAUCc--UGG- -5'
9031 3' -56.3 NC_002512.2 + 169503 0.66 0.960203
Target:  5'- aUAUgGGUGGGGCggGCgUGGgaGGGACCu -3'
miRNA:   3'- -AUGgCCAUCCUGgaUG-GCCa-UCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.