miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 96276 0.66 0.940291
Target:  5'- cACCGGcaggcggGGGGgCUGCCGc--GGGCCg -3'
miRNA:   3'- aUGGCCa------UCCUgGAUGGCcauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 96393 0.67 0.930794
Target:  5'- aACCGG--GGACUcACCGGcggccucGGACCg -3'
miRNA:   3'- aUGGCCauCCUGGaUGGCCau-----CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 96516 0.67 0.925711
Target:  5'- cGCCGGaGGGAgCCgcGCCGGcggugugagccGGGGCCg -3'
miRNA:   3'- aUGGCCaUCCU-GGa-UGGCCa----------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 97071 0.66 0.956648
Target:  5'- gUGCUGGgugcGGAUCUucuuCCGGaAGGACg -3'
miRNA:   3'- -AUGGCCau--CCUGGAu---GGCCaUCCUGg -5'
9031 3' -56.3 NC_002512.2 + 97979 0.67 0.930296
Target:  5'- cGCCGGUacgccccgGGGACCUucgacgagcacguGCUGGU-GG-CCg -3'
miRNA:   3'- aUGGCCA--------UCCUGGA-------------UGGCCAuCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 98536 0.68 0.903151
Target:  5'- cGCCGGcUGGGACCUcgcCCGGcguuccgcGGAUCc -3'
miRNA:   3'- aUGGCC-AUCCUGGAu--GGCCau------CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 99031 0.72 0.696301
Target:  5'- -cCCGGUgGGGGCCUcgcccgaccGCCGGUAcucGACCg -3'
miRNA:   3'- auGGCCA-UCCUGGA---------UGGCCAUc--CUGG- -5'
9031 3' -56.3 NC_002512.2 + 99656 0.66 0.952883
Target:  5'- cGCCGGggcccagAGGuucCCcGCCGccgAGGACCa -3'
miRNA:   3'- aUGGCCa------UCCu--GGaUGGCca-UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 101955 0.66 0.948904
Target:  5'- aGCUGGUGgcccgcGGGCCcGCCGGcGGGcucgugGCCg -3'
miRNA:   3'- aUGGCCAU------CCUGGaUGGCCaUCC------UGG- -5'
9031 3' -56.3 NC_002512.2 + 102868 0.69 0.832036
Target:  5'- gACCGGgGGGacGCCUACgGG--GGACCc -3'
miRNA:   3'- aUGGCCaUCC--UGGAUGgCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 107077 0.69 0.84001
Target:  5'- cGCUGGacguagGGGACCcGCCGccAGGGCCc -3'
miRNA:   3'- aUGGCCa-----UCCUGGaUGGCcaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 108428 0.67 0.920404
Target:  5'- cGCCGcccGGGGCCggggGCCGGgGGGuCCc -3'
miRNA:   3'- aUGGCca-UCCUGGa---UGGCCaUCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 108509 0.7 0.789762
Target:  5'- gGCCGGgcccGGcGCCcgACCGGccgGGGACCc -3'
miRNA:   3'- aUGGCCau--CC-UGGa-UGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 109841 0.72 0.715659
Target:  5'- cGCCGGgcgucgGGGACCggcgugGCggCGGUgGGGACCu -3'
miRNA:   3'- aUGGCCa-----UCCUGGa-----UG--GCCA-UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 110564 0.73 0.666906
Target:  5'- cGCgCGGgAGGuCCUGCCGGgucAGGAUCu -3'
miRNA:   3'- aUG-GCCaUCCuGGAUGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 112587 0.68 0.89696
Target:  5'- --aCGGUgAGGGCgUAgaggaacucCUGGUAGGACCc -3'
miRNA:   3'- augGCCA-UCCUGgAU---------GGCCAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 113275 0.71 0.762743
Target:  5'- gGCCGGcGGGGCa-GCCGcGgcGGGCCu -3'
miRNA:   3'- aUGGCCaUCCUGgaUGGC-CauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 114031 0.66 0.960203
Target:  5'- cACCGGgcgcgguGGACgUAgaGGgcGGGCCc -3'
miRNA:   3'- aUGGCCau-----CCUGgAUggCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 114132 0.71 0.762743
Target:  5'- cACCGGUccgAGGAgCaGCCGGcagAGGACg -3'
miRNA:   3'- aUGGCCA---UCCUgGaUGGCCa--UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 115734 0.66 0.948904
Target:  5'- gACCGGgcccGGGucguCCUcuGCCGGcugcuccuGGACCg -3'
miRNA:   3'- aUGGCCa---UCCu---GGA--UGGCCau------CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.