Results 101 - 117 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 114031 | 0.66 | 0.960203 |
Target: 5'- cACCGGgcgcgguGGACgUAgaGGgcGGGCCc -3' miRNA: 3'- aUGGCCau-----CCUGgAUggCCauCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 229562 | 0.67 | 0.930794 |
Target: 5'- cGCCGGcggAGGAgCgcgcGCCGGgaGGGACg -3' miRNA: 3'- aUGGCCa--UCCUgGa---UGGCCa-UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 159 | 0.67 | 0.930794 |
Target: 5'- cGCCGGcggAGGAgCgcgcGCCGGgaGGGACg -3' miRNA: 3'- aUGGCCa--UCCUgGa---UGGCCa-UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 119326 | 0.67 | 0.925711 |
Target: 5'- -cCCGGcAGGACCUcCCGcGcgGGGGCg -3' miRNA: 3'- auGGCCaUCCUGGAuGGC-Ca-UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 195369 | 0.68 | 0.877109 |
Target: 5'- gUGCUGGUcGGcugccuggucACCUGCCGGgucGACCg -3' miRNA: 3'- -AUGGCCAuCC----------UGGAUGGCCaucCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 222982 | 0.68 | 0.883936 |
Target: 5'- cGCCGGUcuuccucGACCUGCCGGggAGcGGCa -3' miRNA: 3'- aUGGCCAuc-----CUGGAUGGCCa-UC-CUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 226213 | 0.68 | 0.884607 |
Target: 5'- gACgGG-AGGACCU-CCGGaccgucggccgcgagGGGGCCg -3' miRNA: 3'- aUGgCCaUCCUGGAuGGCCa--------------UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 127647 | 0.68 | 0.89696 |
Target: 5'- gAUCGGgucgcucGGACg-GCCGGUcgAGGGCCg -3' miRNA: 3'- aUGGCCau-----CCUGgaUGGCCA--UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 112587 | 0.68 | 0.89696 |
Target: 5'- --aCGGUgAGGGCgUAgaggaacucCUGGUAGGACCc -3' miRNA: 3'- augGCCA-UCCUGgAU---------GGCCAUCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 221855 | 0.68 | 0.903151 |
Target: 5'- -cUCGGgaccGGGACCUcucggaGCgGGUGGGGCg -3' miRNA: 3'- auGGCCa---UCCUGGA------UGgCCAUCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 166462 | 0.67 | 0.914875 |
Target: 5'- cGCCGGgcucgAGGGCggggaCGGcGGGACCg -3' miRNA: 3'- aUGGCCa----UCCUGgaug-GCCaUCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 148435 | 0.67 | 0.914875 |
Target: 5'- cGCCGGgggAGGACggggGCCGGgccccccgcGGGACg -3' miRNA: 3'- aUGGCCa--UCCUGga--UGGCCa--------UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 108428 | 0.67 | 0.920404 |
Target: 5'- cGCCGcccGGGGCCggggGCCGGgGGGuCCc -3' miRNA: 3'- aUGGCca-UCCUGGa---UGGCCaUCCuGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 94574 | 0.67 | 0.920404 |
Target: 5'- cGCCGaccucgGGGACC-GCCGGacaggcgaacUGGGGCCc -3' miRNA: 3'- aUGGCca----UCCUGGaUGGCC----------AUCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 93464 | 0.67 | 0.925711 |
Target: 5'- cGCCGGgaucguggcGGaGACCUACUucggGGUAucGGACCu -3' miRNA: 3'- aUGGCCa--------UC-CUGGAUGG----CCAU--CCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 96516 | 0.67 | 0.925711 |
Target: 5'- cGCCGGaGGGAgCCgcGCCGGcggugugagccGGGGCCg -3' miRNA: 3'- aUGGCCaUCCU-GGa-UGGCCa----------UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 95714 | 0.66 | 0.961567 |
Target: 5'- gGCCGGgagGGGAagacggcuccccgucCCcGCCGGccGGGACg -3' miRNA: 3'- aUGGCCa--UCCU---------------GGaUGGCCa-UCCUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home