Results 81 - 100 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 139803 | 0.67 | 0.914875 |
Target: 5'- gGCCGGcgGGGGCCUcgguCgGGUguccaAGGACg -3' miRNA: 3'- aUGGCCa-UCCUGGAu---GgCCA-----UCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 67963 | 0.67 | 0.930794 |
Target: 5'- cGCCGGUucgccguGGcguCC-GCCGGaggAGGGCCg -3' miRNA: 3'- aUGGCCAu------CCu--GGaUGGCCa--UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 76864 | 0.66 | 0.949311 |
Target: 5'- gACCGG--GGACCgcucccgccgacccgACCGG--GGACCg -3' miRNA: 3'- aUGGCCauCCUGGa--------------UGGCCauCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 99656 | 0.66 | 0.952883 |
Target: 5'- cGCCGGggcccagAGGuucCCcGCCGccgAGGACCa -3' miRNA: 3'- aUGGCCa------UCCu--GGaUGGCca-UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 38922 | 0.66 | 0.952883 |
Target: 5'- -cCCGGaGGGGCC-GCCGcGgcGGGCg -3' miRNA: 3'- auGGCCaUCCUGGaUGGC-CauCCUGg -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 4209 | 0.66 | 0.956648 |
Target: 5'- gAUCGGUGGGAgCgGCCGcgGGGAgCg -3' miRNA: 3'- aUGGCCAUCCUgGaUGGCcaUCCUgG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 45294 | 0.66 | 0.959509 |
Target: 5'- cGCgGGUcGGAcggaccgccgcCCUGCCGGcccgcgggucggAGGGCCg -3' miRNA: 3'- aUGgCCAuCCU-----------GGAUGGCCa-----------UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 122236 | 0.66 | 0.959857 |
Target: 5'- gACCGGUcuGACCUACagcuCGGUcuuccccGGcGGCCg -3' miRNA: 3'- aUGGCCAucCUGGAUG----GCCA-------UC-CUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 57055 | 0.66 | 0.960203 |
Target: 5'- gACCGGgGGGcGCCgggcgaaCGGUAGGcgcACCg -3' miRNA: 3'- aUGGCCaUCC-UGGaug----GCCAUCC---UGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 61453 | 0.66 | 0.960203 |
Target: 5'- cUGCUGGUggcccGGGACCUguACCGGgugAGcAUCg -3' miRNA: 3'- -AUGGCCA-----UCCUGGA--UGGCCa--UCcUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 69117 | 0.66 | 0.948904 |
Target: 5'- cGCCGGccccgcuccGGGACCU-CCGuGcccGGGGCCg -3' miRNA: 3'- aUGGCCa--------UCCUGGAuGGC-Ca--UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 29154 | 0.66 | 0.948904 |
Target: 5'- -cCCGGUAcgacccguucGGACC-GCCGGgcGGcaGCCc -3' miRNA: 3'- auGGCCAU----------CCUGGaUGGCCauCC--UGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 96393 | 0.67 | 0.930794 |
Target: 5'- aACCGG--GGACUcACCGGcggccucGGACCg -3' miRNA: 3'- aUGGCCauCCUGGaUGGCCau-----CCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 95095 | 0.67 | 0.935654 |
Target: 5'- gACCGGcgucGGGCCcggggacGCgGGUGGGGCUc -3' miRNA: 3'- aUGGCCau--CCUGGa------UGgCCAUCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 6333 | 0.66 | 0.940291 |
Target: 5'- cGCgGG-GGGACCgggcgcgggGCCGGc-GGGCCg -3' miRNA: 3'- aUGgCCaUCCUGGa--------UGGCCauCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 96276 | 0.66 | 0.940291 |
Target: 5'- cACCGGcaggcggGGGGgCUGCCGc--GGGCCg -3' miRNA: 3'- aUGGCCa------UCCUgGAUGGCcauCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 76939 | 0.66 | 0.944707 |
Target: 5'- gACCGG--GGACCgcucccgcugACCGaccgGGGACCg -3' miRNA: 3'- aUGGCCauCCUGGa---------UGGCca--UCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 76987 | 0.66 | 0.946412 |
Target: 5'- gACCGG--GGACCgcucccguucaccgACCGG--GGACCg -3' miRNA: 3'- aUGGCCauCCUGGa-------------UGGCCauCCUGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 101955 | 0.66 | 0.948904 |
Target: 5'- aGCUGGUGgcccgcGGGCCcGCCGGcGGGcucgugGCCg -3' miRNA: 3'- aUGGCCAU------CCUGGaUGGCCaUCC------UGG- -5' |
|||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 115734 | 0.66 | 0.948904 |
Target: 5'- gACCGGgcccGGGucguCCUcuGCCGGcugcuccuGGACCg -3' miRNA: 3'- aUGGCCa---UCCu---GGA--UGGCCau------CCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home