Results 61 - 80 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 127179 | 0.67 | 0.67372 |
Target: 5'- -gCAGG-GUCCGGGccACUgCGUCGCCg -3' miRNA: 3'- caGUCCuCGGGCUC--UGGgGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 14730 | 0.67 | 0.67372 |
Target: 5'- -gCAGGAcgGCCa-GGugCUCGUCGCCUc -3' miRNA: 3'- caGUCCU--CGGgcUCugGGGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 126929 | 0.67 | 0.67372 |
Target: 5'- -cCGGGA-CCaCGAguucuccgcgGACUCCGUCGCCUg -3' miRNA: 3'- caGUCCUcGG-GCU----------CUGGGGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 206124 | 0.67 | 0.67372 |
Target: 5'- gGUCAGGcGCagCGGGGCguCCgGUCGCCa -3' miRNA: 3'- -CAGUCCuCGg-GCUCUG--GGgCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 91475 | 0.67 | 0.672771 |
Target: 5'- gGUCAGGuacuugguGGCCCGcggcucgaagcgcAGGCUCCGUUGCg- -3' miRNA: 3'- -CAGUCC--------UCGGGC-------------UCUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 111830 | 0.67 | 0.664218 |
Target: 5'- gGUCcGGGGUCCGGuGgucguagagcGCCgCCGUCGCCg -3' miRNA: 3'- -CAGuCCUCGGGCU-C----------UGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 142297 | 0.67 | 0.664218 |
Target: 5'- -aCGGGGGaUCCGAcGCgUCCGUCGCCg -3' miRNA: 3'- caGUCCUC-GGGCUcUG-GGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 213008 | 0.67 | 0.664218 |
Target: 5'- cGUC-GG-GCCCGGGGCCCucucgaggugCGUcCGCCg -3' miRNA: 3'- -CAGuCCuCGGGCUCUGGG----------GCA-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 49451 | 0.67 | 0.664218 |
Target: 5'- -aCGGGcgccGCCCGGGGCgCCGUCaCCg -3' miRNA: 3'- caGUCCu---CGGGCUCUGgGGCAGcGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 118583 | 0.67 | 0.664218 |
Target: 5'- gGUCAGcuGGUCCcAGACCCCGggCGUCUg -3' miRNA: 3'- -CAGUCc-UCGGGcUCUGGGGCa-GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 128852 | 0.67 | 0.654693 |
Target: 5'- cUCGGGcGCCgCGcGGGCCCUGgugcugCGCCUg -3' miRNA: 3'- cAGUCCuCGG-GC-UCUGGGGCa-----GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 11214 | 0.67 | 0.654693 |
Target: 5'- -cCGGcGGGCCCGGuGugCCCGgguaucCGCCUc -3' miRNA: 3'- caGUC-CUCGGGCU-CugGGGCa-----GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 70528 | 0.67 | 0.654693 |
Target: 5'- --uGGGAcGCCCc-GACCCCGaCGCCg -3' miRNA: 3'- cagUCCU-CGGGcuCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 44084 | 0.68 | 0.645153 |
Target: 5'- --gAGGAGCUCGGGGuaggcccuCCCC-UCGCCg -3' miRNA: 3'- cagUCCUCGGGCUCU--------GGGGcAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 127570 | 0.68 | 0.635603 |
Target: 5'- -cCGGGAgGCCCGAcgGACCguccgcgaCGUCGCCc -3' miRNA: 3'- caGUCCU-CGGGCU--CUGGg-------GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 111771 | 0.68 | 0.635603 |
Target: 5'- cGUCgccaGGGAGCCCcgcuGGGACgCCCacggguuguugGUCGCCg -3' miRNA: 3'- -CAG----UCCUCGGG----CUCUG-GGG-----------CAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 134630 | 0.68 | 0.635603 |
Target: 5'- uUCAGGAGCCgCGcGGCCCUccgGaCGCCc -3' miRNA: 3'- cAGUCCUCGG-GCuCUGGGG---CaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 220336 | 0.68 | 0.635603 |
Target: 5'- --gGGGGGCCgGAcGGCCUCGUcaaCGCCg -3' miRNA: 3'- cagUCCUCGGgCU-CUGGGGCA---GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 95708 | 0.68 | 0.634648 |
Target: 5'- -aCGGGGGgCCGGGAggggaagacggcuCCCCGUcccCGCCg -3' miRNA: 3'- caGUCCUCgGGCUCU-------------GGGGCA---GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 135635 | 0.68 | 0.626051 |
Target: 5'- cUCGGGGGUCCGGGuCgCCGgcgGCCUg -3' miRNA: 3'- cAGUCCUCGGGCUCuGgGGCag-CGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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