miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 215083 0.71 0.434588
Target:  5'- cGUCGGcGGGaCCGAgGACUUCGUCGCCg -3'
miRNA:   3'- -CAGUC-CUCgGGCU-CUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 135221 0.71 0.460111
Target:  5'- --gGGGGGCCCcccGGCCCCGggcCGCCUc -3'
miRNA:   3'- cagUCCUCGGGcu-CUGGGGCa--GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 37735 0.71 0.460111
Target:  5'- -gCAGGGGCCgCGGGAUcuggCCCG-CGCCg -3'
miRNA:   3'- caGUCCUCGG-GCUCUG----GGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 119575 0.71 0.460111
Target:  5'- -gCGGGAGCCCGgcGGGuCCCCucgCGCCa -3'
miRNA:   3'- caGUCCUCGGGC--UCU-GGGGca-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 221714 0.71 0.468794
Target:  5'- cUCGGGuGCuacgCCGAGAuCCCCGagCGCCUg -3'
miRNA:   3'- cAGUCCuCG----GGCUCU-GGGGCa-GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 130291 0.7 0.477561
Target:  5'- ---cGGGGCCCGGGACgugCCGUaCGCCg -3'
miRNA:   3'- caguCCUCGGGCUCUGg--GGCA-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 29707 0.7 0.477561
Target:  5'- cGUCucggAGGAGCCCauGACCgUGUCGCCc -3'
miRNA:   3'- -CAG----UCCUCGGGcuCUGGgGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 101184 0.7 0.485519
Target:  5'- uUCAGGAugguguuGUCCGAGACgCCGgcguUCGCCa -3'
miRNA:   3'- cAGUCCU-------CGGGCUCUGgGGC----AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 165265 0.7 0.486407
Target:  5'- cGUCGcGGAGCCCcGGACCCCuuucagCGUCUc -3'
miRNA:   3'- -CAGU-CCUCGGGcUCUGGGGca----GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 217763 0.7 0.486407
Target:  5'- -cCccGGGCCCGu--CCCCGUCGCCg -3'
miRNA:   3'- caGucCUCGGGCucuGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 206974 0.7 0.494436
Target:  5'- -gCAGGAagaagccGCCCGGGAUgCCCGUgGCCc -3'
miRNA:   3'- caGUCCU-------CGGGCUCUG-GGGCAgCGGa -5'
9032 3' -62.3 NC_002512.2 + 226485 0.7 0.495331
Target:  5'- ---cGGGGCCCGGGcgcuCCCC-UCGCCg -3'
miRNA:   3'- caguCCUCGGGCUCu---GGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 211974 0.7 0.495331
Target:  5'- cGUCAGGAcgcgGCCgucguccuCGGGGCCgCCGcCGCCUa -3'
miRNA:   3'- -CAGUCCU----CGG--------GCUCUGG-GGCaGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 99659 0.7 0.504328
Target:  5'- ---cGGGGCCCaGAGGuuCCCCGcCGCCg -3'
miRNA:   3'- caguCCUCGGG-CUCU--GGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 3139 0.7 0.521613
Target:  5'- cGUCGuccggccGGAGCCCGGucCCgCCGUCGUCg -3'
miRNA:   3'- -CAGU-------CCUCGGGCUcuGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 216185 0.7 0.522529
Target:  5'- cUCGGGAucgcGCCCGuGAUCaccgccgcggCCGUCGCCUc -3'
miRNA:   3'- cAGUCCU----CGGGCuCUGG----------GGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 96547 0.69 0.531724
Target:  5'- ---cGGGGCCgGGGAUCCCGgaCGCCa -3'
miRNA:   3'- caguCCUCGGgCUCUGGGGCa-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 35919 0.69 0.531724
Target:  5'- gGUCAGGAGCcgCCGGcGGCCUCucgCGCCa -3'
miRNA:   3'- -CAGUCCUCG--GGCU-CUGGGGca-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 227363 0.69 0.531724
Target:  5'- --gAGGAgGCCCGGGGCCgCCGgCGUCg -3'
miRNA:   3'- cagUCCU-CGGGCUCUGG-GGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 18928 0.69 0.531724
Target:  5'- -aCAGG-GCCCGGacGACCUCGUUgGCCUc -3'
miRNA:   3'- caGUCCuCGGGCU--CUGGGGCAG-CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.