miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 23531 0.75 0.251956
Target:  5'- -cCGGGAGCCCGAGAUCauGuUCGCCa -3'
miRNA:   3'- caGUCCUCGGGCUCUGGggC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 25945 0.67 0.70202
Target:  5'- -cCGGGGGCCaCGAgGGCCUCGUaguagcggaGCCa -3'
miRNA:   3'- caGUCCUCGG-GCU-CUGGGGCAg--------CGGa -5'
9032 3' -62.3 NC_002512.2 + 29707 0.7 0.477561
Target:  5'- cGUCucggAGGAGCCCauGACCgUGUCGCCc -3'
miRNA:   3'- -CAG----UCCUCGGGcuCUGGgGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 30531 0.66 0.720643
Target:  5'- -gCuGGAGCCgGuGAUCUCGuUCGCCg -3'
miRNA:   3'- caGuCCUCGGgCuCUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 34878 0.66 0.757035
Target:  5'- cGUCGcc-GCcgCCGGGACCgCCGUCGCCc -3'
miRNA:   3'- -CAGUccuCG--GGCUCUGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 35919 0.69 0.531724
Target:  5'- gGUCAGGAGCcgCCGGcGGCCUCucgCGCCa -3'
miRNA:   3'- -CAGUCCUCG--GGCU-CUGGGGca-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 37309 0.66 0.748062
Target:  5'- -gCGGGAcgguccGCuCCGAGGCCCCGgccacggacgCGCUg -3'
miRNA:   3'- caGUCCU------CG-GGCUCUGGGGCa---------GCGGa -5'
9032 3' -62.3 NC_002512.2 + 37735 0.71 0.460111
Target:  5'- -gCAGGGGCCgCGGGAUcuggCCCG-CGCCg -3'
miRNA:   3'- caGUCCUCGG-GCUCUG----GGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 39527 0.66 0.720643
Target:  5'- -aCAGGAccgGgCCGAcGcCCCCGUCGUCg -3'
miRNA:   3'- caGUCCU---CgGGCU-CuGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 41776 0.66 0.711361
Target:  5'- -aCAGc-GUCUGuGAUCCCGUCGCCg -3'
miRNA:   3'- caGUCcuCGGGCuCUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 42192 0.71 0.434588
Target:  5'- gGUCGGGGGUUCGGGuuCCCGgUGCCUc -3'
miRNA:   3'- -CAGUCCUCGGGCUCugGGGCaGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 44084 0.68 0.645153
Target:  5'- --gAGGAGCUCGGGGuaggcccuCCCC-UCGCCg -3'
miRNA:   3'- cagUCCUCGGGCUCU--------GGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 49451 0.67 0.664218
Target:  5'- -aCGGGcgccGCCCGGGGCgCCGUCaCCg -3'
miRNA:   3'- caGUCCu---CGGGCUCUGgGGCAGcGGa -5'
9032 3' -62.3 NC_002512.2 + 55466 0.68 0.626051
Target:  5'- ---uGGuAGCCCcgacgGAGGCCCCGgCGCCg -3'
miRNA:   3'- caguCC-UCGGG-----CUCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 58901 0.66 0.720643
Target:  5'- ---cGGAGCCCGAGcCCuCCGUCcUCa -3'
miRNA:   3'- caguCCUCGGGCUCuGG-GGCAGcGGa -5'
9032 3' -62.3 NC_002512.2 + 64623 0.67 0.692628
Target:  5'- --aAGGGGUCCGGGGCUCCGcgacgCGUCc -3'
miRNA:   3'- cagUCCUCGGGCUCUGGGGCa----GCGGa -5'
9032 3' -62.3 NC_002512.2 + 68144 0.71 0.43208
Target:  5'- -gCAGGAGCggcgccucCCGAuuguaggucaagacGAUCCCGUCGCCg -3'
miRNA:   3'- caGUCCUCG--------GGCU--------------CUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 70528 0.67 0.654693
Target:  5'- --uGGGAcGCCCc-GACCCCGaCGCCg -3'
miRNA:   3'- cagUCCU-CGGGcuCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 73115 0.66 0.720643
Target:  5'- ---uGGucGCCCGAGACgCCCGUCGaguaCa -3'
miRNA:   3'- caguCCu-CGGGCUCUG-GGGCAGCg---Ga -5'
9032 3' -62.3 NC_002512.2 + 74622 0.66 0.757035
Target:  5'- ---cGGAGCgCGAGACCgCCG-CGCg- -3'
miRNA:   3'- caguCCUCGgGCUCUGG-GGCaGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.