miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 2166 0.69 0.569038
Target:  5'- gGUCgAGGAGUCgGGGAccguaccgcgcCCCCGcCGCCg -3'
miRNA:   3'- -CAG-UCCUCGGgCUCU-----------GGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 2241 0.72 0.39394
Target:  5'- cUCcGGA-CCCGGGcGCUCCGUCGCCUg -3'
miRNA:   3'- cAGuCCUcGGGCUC-UGGGGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 3139 0.7 0.521613
Target:  5'- cGUCGuccggccGGAGCCCGGucCCgCCGUCGUCg -3'
miRNA:   3'- -CAGU-------CCUCGGGCUcuGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 3243 0.66 0.756142
Target:  5'- cGUCGGGugacgacGGUCCGcGGGCucgguCCCGUCGCUg -3'
miRNA:   3'- -CAGUCC-------UCGGGC-UCUG-----GGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 3407 0.67 0.683192
Target:  5'- --gGGGAGCgCCcGGGCCCCGgccuccuccCGCCUc -3'
miRNA:   3'- cagUCCUCG-GGcUCUGGGGCa--------GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 4653 0.66 0.739001
Target:  5'- -aCGGGAG-CgGAGGCCCCGcCGgCg -3'
miRNA:   3'- caGUCCUCgGgCUCUGGGGCaGCgGa -5'
9032 3' -62.3 NC_002512.2 + 5532 0.67 0.692628
Target:  5'- --gAGGucucccGCCCGcGACCCCGgcgcggCGCCg -3'
miRNA:   3'- cagUCCu-----CGGGCuCUGGGGCa-----GCGGa -5'
9032 3' -62.3 NC_002512.2 + 6511 0.69 0.569038
Target:  5'- cUCAGGAGCCCGugauAGACgCCGgaUCGgCg -3'
miRNA:   3'- cAGUCCUCGGGC----UCUGgGGC--AGCgGa -5'
9032 3' -62.3 NC_002512.2 + 7270 0.73 0.327276
Target:  5'- cGUCGGGAucggGCgCGAGGCCCCGgggGCCg -3'
miRNA:   3'- -CAGUCCU----CGgGCUCUGGGGCag-CGGa -5'
9032 3' -62.3 NC_002512.2 + 8169 0.66 0.760597
Target:  5'- cUCGGGGaucucggcguagcaCCCGAGGCCgagCGUCGCCg -3'
miRNA:   3'- cAGUCCUc-------------GGGCUCUGGg--GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 8328 0.66 0.711361
Target:  5'- -cCGGGAGCCgGAGACCgCGggucCGgCg -3'
miRNA:   3'- caGUCCUCGGgCUCUGGgGCa---GCgGa -5'
9032 3' -62.3 NC_002512.2 + 8365 0.69 0.587946
Target:  5'- -gCGGGAGCgCCGAgGAUCCgCGgCGCCg -3'
miRNA:   3'- caGUCCUCG-GGCU-CUGGG-GCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 11214 0.67 0.654693
Target:  5'- -cCGGcGGGCCCGGuGugCCCGgguaucCGCCUc -3'
miRNA:   3'- caGUC-CUCGGGCU-CugGGGCa-----GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 11597 0.75 0.257646
Target:  5'- -cCAGG-GCCgGGGACCCCGagGCCg -3'
miRNA:   3'- caGUCCuCGGgCUCUGGGGCagCGGa -5'
9032 3' -62.3 NC_002512.2 + 14730 0.67 0.67372
Target:  5'- -gCAGGAcgGCCa-GGugCUCGUCGCCUc -3'
miRNA:   3'- caGUCCU--CGGgcUCugGGGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 16568 0.69 0.572808
Target:  5'- cGUCGGGcAGCCCGuAGGCCaggaaaucgacgaggUCGUCgGCCa -3'
miRNA:   3'- -CAGUCC-UCGGGC-UCUGG---------------GGCAG-CGGa -5'
9032 3' -62.3 NC_002512.2 + 18928 0.69 0.531724
Target:  5'- -aCAGG-GCCCGGacGACCUCGUUgGCCUc -3'
miRNA:   3'- caGUCCuCGGGCU--CUGGGGCAG-CGGA- -5'
9032 3' -62.3 NC_002512.2 + 19365 0.73 0.355839
Target:  5'- cGUCGGGGGCUCGGcGGCCUCG-CGCUc -3'
miRNA:   3'- -CAGUCCUCGGGCU-CUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 20498 0.66 0.751662
Target:  5'- -gCAGGAGCUggccgaggucgaaguCGGGACacaCgGUCGCCa -3'
miRNA:   3'- caGUCCUCGG---------------GCUCUGg--GgCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 22541 0.72 0.401872
Target:  5'- uGUCGaucGGGGCCgGGGACuaCUCGUCGCCg -3'
miRNA:   3'- -CAGU---CCUCGGgCUCUG--GGGCAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.