miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 35919 0.69 0.531724
Target:  5'- gGUCAGGAGCcgCCGGcGGCCUCucgCGCCa -3'
miRNA:   3'- -CAGUCCUCG--GGCU-CUGGGGca-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 135221 0.71 0.460111
Target:  5'- --gGGGGGCCCcccGGCCCCGggcCGCCUc -3'
miRNA:   3'- cagUCCUCGGGcu-CUGGGGCa--GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 37735 0.71 0.460111
Target:  5'- -gCAGGGGCCgCGGGAUcuggCCCG-CGCCg -3'
miRNA:   3'- caGUCCUCGG-GCUCUG----GGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 29707 0.7 0.477561
Target:  5'- cGUCucggAGGAGCCCauGACCgUGUCGCCc -3'
miRNA:   3'- -CAG----UCCUCGGGcuCUGGgGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 130291 0.7 0.477561
Target:  5'- ---cGGGGCCCGGGACgugCCGUaCGCCg -3'
miRNA:   3'- caguCCUCGGGCUCUGg--GGCA-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 101184 0.7 0.485519
Target:  5'- uUCAGGAugguguuGUCCGAGACgCCGgcguUCGCCa -3'
miRNA:   3'- cAGUCCU-------CGGGCUCUGgGGC----AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 99659 0.7 0.504328
Target:  5'- ---cGGGGCCCaGAGGuuCCCCGcCGCCg -3'
miRNA:   3'- caguCCUCGGG-CUCU--GGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 3139 0.7 0.521613
Target:  5'- cGUCGuccggccGGAGCCCGGucCCgCCGUCGUCg -3'
miRNA:   3'- -CAGU-------CCUCGGGCUcuGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 18928 0.69 0.531724
Target:  5'- -aCAGG-GCCCGGacGACCUCGUUgGCCUc -3'
miRNA:   3'- caGUCCuCGGGCU--CUGGGGCAG-CGGA- -5'
9032 3' -62.3 NC_002512.2 + 42192 0.71 0.434588
Target:  5'- gGUCGGGGGUUCGGGuuCCCGgUGCCUc -3'
miRNA:   3'- -CAGUCCUCGGGCUCugGGGCaGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 68144 0.71 0.43208
Target:  5'- -gCAGGAGCggcgccucCCGAuuguaggucaagacGAUCCCGUCGCCg -3'
miRNA:   3'- caGUCCUCG--------GGCU--------------CUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 127935 0.71 0.426263
Target:  5'- -gUAGGGuaCCCGAGGCCCCGuUCGCUc -3'
miRNA:   3'- caGUCCUc-GGGCUCUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 11597 0.75 0.257646
Target:  5'- -cCAGG-GCCgGGGACCCCGagGCCg -3'
miRNA:   3'- caGUCCuCGGgCUCUGGGGCagCGGa -5'
9032 3' -62.3 NC_002512.2 + 82174 0.74 0.287682
Target:  5'- cGUCAGGAgGgUCGAGAgCCCGUcCGCCg -3'
miRNA:   3'- -CAGUCCU-CgGGCUCUgGGGCA-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 103487 0.74 0.29401
Target:  5'- cGUCGacGGcGCCCGGGGCCCCGggCGCUc -3'
miRNA:   3'- -CAGU--CCuCGGGCUCUGGGGCa-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 7270 0.73 0.327276
Target:  5'- cGUCGGGAucggGCgCGAGGCCCCGgggGCCg -3'
miRNA:   3'- -CAGUCCU----CGgGCUCUGGGGCag-CGGa -5'
9032 3' -62.3 NC_002512.2 + 19365 0.73 0.355839
Target:  5'- cGUCGGGGGCUCGGcGGCCUCG-CGCUc -3'
miRNA:   3'- -CAGUCCUCGGGCU-CUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 2241 0.72 0.39394
Target:  5'- cUCcGGA-CCCGGGcGCUCCGUCGCCUg -3'
miRNA:   3'- cAGuCCUcGGGCUC-UGGGGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 22541 0.72 0.401872
Target:  5'- uGUCGaucGGGGCCgGGGACuaCUCGUCGCCg -3'
miRNA:   3'- -CAGU---CCUCGGgCUCUG--GGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 80496 0.72 0.418035
Target:  5'- cGUCgAGGAGCCgGAGuccugcguCCCCG-CGCCc -3'
miRNA:   3'- -CAG-UCCUCGGgCUCu-------GGGGCaGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.