miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 82475 0.66 0.711361
Target:  5'- --aAGGGGCCC-AGACgCCGUuugaCGCCg -3'
miRNA:   3'- cagUCCUCGGGcUCUGgGGCA----GCGGa -5'
9032 3' -62.3 NC_002512.2 + 81446 0.66 0.748062
Target:  5'- --gGGGGGCCCG-GcCCCCGUCcuCCc -3'
miRNA:   3'- cagUCCUCGGGCuCuGGGGCAGc-GGa -5'
9032 3' -62.3 NC_002512.2 + 142033 0.66 0.729859
Target:  5'- -cCGGGGGCCggcgacccgccgCGAGGgCCCGaCGCCc -3'
miRNA:   3'- caGUCCUCGG------------GCUCUgGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 30531 0.66 0.720643
Target:  5'- -gCuGGAGCCgGuGAUCUCGuUCGCCg -3'
miRNA:   3'- caGuCCUCGGgCuCUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 4653 0.66 0.739001
Target:  5'- -aCGGGAG-CgGAGGCCCCGcCGgCg -3'
miRNA:   3'- caGUCCUCgGgCUCUGGGGCaGCgGa -5'
9032 3' -62.3 NC_002512.2 + 39527 0.66 0.720643
Target:  5'- -aCAGGAccgGgCCGAcGcCCCCGUCGUCg -3'
miRNA:   3'- caGUCCU---CgGGCU-CuGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 8328 0.66 0.711361
Target:  5'- -cCGGGAGCCgGAGACCgCGggucCGgCg -3'
miRNA:   3'- caGUCCUCGGgCUCUGGgGCa---GCgGa -5'
9032 3' -62.3 NC_002512.2 + 96727 0.66 0.739001
Target:  5'- uUCGcGAGCgCGAuGGCUCCGcCGCCUg -3'
miRNA:   3'- cAGUcCUCGgGCU-CUGGGGCaGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 121618 0.66 0.729859
Target:  5'- uUCAGGcAGCCCGGcgaaucgcGGCUCCG-CGuCCUg -3'
miRNA:   3'- cAGUCC-UCGGGCU--------CUGGGGCaGC-GGA- -5'
9032 3' -62.3 NC_002512.2 + 175316 0.66 0.711361
Target:  5'- uGUCAGGGuGCggauCCGGgcuGACCCCGcUCGUCa -3'
miRNA:   3'- -CAGUCCU-CG----GGCU---CUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 123196 0.66 0.748062
Target:  5'- -aCGGGAcgaggaggagcuGCCCGAGGa--CGUCGCCg -3'
miRNA:   3'- caGUCCU------------CGGGCUCUgggGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 175511 0.66 0.711361
Target:  5'- aUCGGGAcgugGaCCCGGgcuGACCCCGcUCGUCa -3'
miRNA:   3'- cAGUCCU----C-GGGCU---CUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 127657 0.66 0.720643
Target:  5'- gGUCGGacaGAGCgCCGAgGACCUCGUCGaCg -3'
miRNA:   3'- -CAGUC---CUCG-GGCU-CUGGGGCAGCgGa -5'
9032 3' -62.3 NC_002512.2 + 89239 0.66 0.729859
Target:  5'- --aAGGAucgguucucGUUCGAGAUCaCCGUCGCCg -3'
miRNA:   3'- cagUCCU---------CGGGCUCUGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 126971 0.66 0.748062
Target:  5'- -cCuGGGGCCCGuGGCCgucgaCCG-CGCCa -3'
miRNA:   3'- caGuCCUCGGGCuCUGG-----GGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 73115 0.66 0.720643
Target:  5'- ---uGGucGCCCGAGACgCCCGUCGaguaCa -3'
miRNA:   3'- caguCCu-CGGGCUCUG-GGGCAGCg---Ga -5'
9032 3' -62.3 NC_002512.2 + 130114 0.66 0.73809
Target:  5'- gGUCgagaGGGAGCUgGAGGCCCgggguggUGUCGCg- -3'
miRNA:   3'- -CAG----UCCUCGGgCUCUGGG-------GCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 175704 0.66 0.711361
Target:  5'- aUCGGGAcgugGaCCCGGgcuGACCCCGcUCGUCa -3'
miRNA:   3'- cAGUCCU----C-GGGCU---CUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 37309 0.66 0.748062
Target:  5'- -gCGGGAcgguccGCuCCGAGGCCCCGgccacggacgCGCUg -3'
miRNA:   3'- caGUCCU------CG-GGCUCUGGGGCa---------GCGGa -5'
9032 3' -62.3 NC_002512.2 + 20498 0.66 0.751662
Target:  5'- -gCAGGAGCUggccgaggucgaaguCGGGACacaCgGUCGCCa -3'
miRNA:   3'- caGUCCUCGG---------------GCUCUGg--GgCAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.