miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 227964 0.72 0.418035
Target:  5'- --gGGGAGCCgGAGaggaggGCCCCGgCGCCg -3'
miRNA:   3'- cagUCCUCGGgCUC------UGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 227363 0.69 0.531724
Target:  5'- --gAGGAgGCCCGGGGCCgCCGgCGUCg -3'
miRNA:   3'- cagUCCU-CGGGCUCUGG-GGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 226485 0.7 0.495331
Target:  5'- ---cGGGGCCCGGGcgcuCCCC-UCGCCg -3'
miRNA:   3'- caguCCUCGGGCUCu---GGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 225815 0.68 0.616503
Target:  5'- -cCGGGuGGCCUGGGACCUCGa-GCCg -3'
miRNA:   3'- caGUCC-UCGGGCUCUGGGGCagCGGa -5'
9032 3' -62.3 NC_002512.2 + 224019 0.69 0.587946
Target:  5'- aGUCGGacGAcGCCCGGGACUCCGacggggcCGCCg -3'
miRNA:   3'- -CAGUC--CU-CGGGCUCUGGGGCa------GCGGa -5'
9032 3' -62.3 NC_002512.2 + 223329 0.66 0.720643
Target:  5'- gGUCGGGAGgaCGGGACCCUcagguUCGUCUu -3'
miRNA:   3'- -CAGUCCUCggGCUCUGGGGc----AGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 222588 0.68 0.620322
Target:  5'- cGUCGcGGAGgaggccuguccggccCCCGGGGCCUCG-CGCCc -3'
miRNA:   3'- -CAGU-CCUC---------------GGGCUCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 222217 0.69 0.57753
Target:  5'- cGUCGGGguGGCCguCGGGGCCgcguccuUCGUCGCCg -3'
miRNA:   3'- -CAGUCC--UCGG--GCUCUGG-------GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 221714 0.71 0.468794
Target:  5'- cUCGGGuGCuacgCCGAGAuCCCCGagCGCCUg -3'
miRNA:   3'- cAGUCCuCG----GGCUCU-GGGGCa-GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 221118 0.68 0.606013
Target:  5'- cUCGGGAGCuuccgacggcgCUGAGGaccgcguCCCCGUCGUCg -3'
miRNA:   3'- cAGUCCUCG-----------GGCUCU-------GGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 220499 0.67 0.70202
Target:  5'- -gCAGcGAGgCCGuGGCCUgCGUCGCCc -3'
miRNA:   3'- caGUC-CUCgGGCuCUGGG-GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 220336 0.68 0.635603
Target:  5'- --gGGGGGCCgGAcGGCCUCGUcaaCGCCg -3'
miRNA:   3'- cagUCCUCGGgCU-CUGGGGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 218625 0.66 0.720643
Target:  5'- --aAGGAcGCgcgUCGGGACCCUGUCGCg- -3'
miRNA:   3'- cagUCCU-CG---GGCUCUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 218030 0.67 0.696391
Target:  5'- -gUAGGGGUCCuccgcgucccuCCCCGUCGCCg -3'
miRNA:   3'- caGUCCUCGGGcucu-------GGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 217763 0.7 0.486407
Target:  5'- -cCccGGGCCCGu--CCCCGUCGCCg -3'
miRNA:   3'- caGucCUCGGGCucuGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 217475 0.68 0.616503
Target:  5'- -gCGGcGAGCUCGcGAUCCCGgCGCCg -3'
miRNA:   3'- caGUC-CUCGGGCuCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 216185 0.7 0.522529
Target:  5'- cUCGGGAucgcGCCCGuGAUCaccgccgcggCCGUCGCCUc -3'
miRNA:   3'- cAGUCCU----CGGGCuCUGG----------GGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 215083 0.71 0.434588
Target:  5'- cGUCGGcGGGaCCGAgGACUUCGUCGCCg -3'
miRNA:   3'- -CAGUC-CUCgGGCU-CUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 213348 0.66 0.757035
Target:  5'- aUCcGGAGCCaggGGGACgCCCG-CGCUg -3'
miRNA:   3'- cAGuCCUCGGg--CUCUG-GGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 213008 0.67 0.664218
Target:  5'- cGUC-GG-GCCCGGGGCCCucucgaggugCGUcCGCCg -3'
miRNA:   3'- -CAGuCCuCGGGCUCUGGG----------GCA-GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.