miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 225792 0.69 0.895876
Target:  5'- -uGCGCcGGCCGGGccgCGGGCggCCGg -3'
miRNA:   3'- ugUGCGcUUGGCCCaaaGCUCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 97768 0.69 0.902108
Target:  5'- uGCuCGCGGccuACCGGGcggcccUCGAGCcCCGg -3'
miRNA:   3'- -UGuGCGCU---UGGCCCaa----AGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 208587 0.68 0.908122
Target:  5'- cGCGCaGCGGGuCCGGGacgaggUCGAGgUUCCGu -3'
miRNA:   3'- -UGUG-CGCUU-GGCCCaa----AGCUC-GAGGC- -5'
9032 5' -55.6 NC_002512.2 + 216042 0.68 0.908122
Target:  5'- gGCGCGCGAGugcgaCGGGcgUUCGGGg-CCGg -3'
miRNA:   3'- -UGUGCGCUUg----GCCCa-AAGCUCgaGGC- -5'
9032 5' -55.6 NC_002512.2 + 191319 0.68 0.908122
Target:  5'- -gACGCGggUCGGGacgCGGGUgCCGu -3'
miRNA:   3'- ugUGCGCuuGGCCCaaaGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 112160 0.68 0.913915
Target:  5'- gACG-GCGAGCCGGcgcUCGAGC-CCGc -3'
miRNA:   3'- -UGUgCGCUUGGCCcaaAGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 106179 0.68 0.913915
Target:  5'- gUACgGCGAcGCCGGGUccUUCGGGUuggcgaucaUCCGg -3'
miRNA:   3'- uGUG-CGCU-UGGCCCA--AAGCUCG---------AGGC- -5'
9032 5' -55.6 NC_002512.2 + 217296 0.68 0.919487
Target:  5'- gAC-CGCGcGCCGGGagaugaUCG-GCUCCGc -3'
miRNA:   3'- -UGuGCGCuUGGCCCaa----AGCuCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 221552 0.68 0.924835
Target:  5'- cUACGCGGAcCCGcGGUcUCcGGCUCCc -3'
miRNA:   3'- uGUGCGCUU-GGC-CCAaAGcUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 141208 0.68 0.924835
Target:  5'- aGCA-GCGcAGCCGGGgcgggUUCGGGCggUCCc -3'
miRNA:   3'- -UGUgCGC-UUGGCCCa----AAGCUCG--AGGc -5'
9032 5' -55.6 NC_002512.2 + 134914 0.68 0.928445
Target:  5'- gUACGCGGACCGGcgcggcGUcugUCGgaucuuccuccgggGGCUCCGg -3'
miRNA:   3'- uGUGCGCUUGGCC------CAa--AGC--------------UCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 135586 0.68 0.929959
Target:  5'- -gGCGC-AACCGGGUggaCGAccGCUCCc -3'
miRNA:   3'- ugUGCGcUUGGCCCAaa-GCU--CGAGGc -5'
9032 5' -55.6 NC_002512.2 + 172038 0.67 0.934859
Target:  5'- aGCAUGCGccccacccGCCGGGUcauccgUGAGCUCUu -3'
miRNA:   3'- -UGUGCGCu-------UGGCCCAaa----GCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 27242 0.67 0.93486
Target:  5'- ---aGCGGGCCGGGcUagGAGCUCa- -3'
miRNA:   3'- ugugCGCUUGGCCCaAagCUCGAGgc -5'
9032 5' -55.6 NC_002512.2 + 25208 0.67 0.939537
Target:  5'- cCGCGaCGGAgCGGGag-CGAGCcgCCGg -3'
miRNA:   3'- uGUGC-GCUUgGCCCaaaGCUCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 82613 0.67 0.939537
Target:  5'- gACGCGCGGcgucCCGGG--UCGGGUUUCc -3'
miRNA:   3'- -UGUGCGCUu---GGCCCaaAGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 194020 0.67 0.939537
Target:  5'- aACGCGaUGGACCGGGagUCG-GCgaUCCa -3'
miRNA:   3'- -UGUGC-GCUUGGCCCaaAGCuCG--AGGc -5'
9032 5' -55.6 NC_002512.2 + 169206 0.67 0.939537
Target:  5'- -aGCGCGAACUGGuacGUcUCGAGCaCCu -3'
miRNA:   3'- ugUGCGCUUGGCC---CAaAGCUCGaGGc -5'
9032 5' -55.6 NC_002512.2 + 87184 0.67 0.943992
Target:  5'- cCACGCGGagACCGcGGUgUUCGAguGCUCgGu -3'
miRNA:   3'- uGUGCGCU--UGGC-CCA-AAGCU--CGAGgC- -5'
9032 5' -55.6 NC_002512.2 + 75117 0.67 0.943992
Target:  5'- cCugGCGGACaCGGGgagaCGGGCaCCGc -3'
miRNA:   3'- uGugCGCUUG-GCCCaaa-GCUCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.