Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9032 | 5' | -55.6 | NC_002512.2 | + | 227435 | 0.71 | 0.796941 |
Target: 5'- -gGCGCGGGCCGcGGUcaccUUCGcGCUgCCGg -3' miRNA: 3'- ugUGCGCUUGGC-CCA----AAGCuCGA-GGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 170980 | 0.71 | 0.805584 |
Target: 5'- cUACGUGAggACgGaGGgcUCGGGCUCCGg -3' miRNA: 3'- uGUGCGCU--UGgC-CCaaAGCUCGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 109830 | 0.71 | 0.805584 |
Target: 5'- uCACGuCGAaccGCCGGGcgUCGGGgaCCGg -3' miRNA: 3'- uGUGC-GCU---UGGCCCaaAGCUCgaGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 112949 | 0.71 | 0.805584 |
Target: 5'- aGCcCGCGGACCGGGUcgaagUCGaAGCcggggacgccgUCCGa -3' miRNA: 3'- -UGuGCGCUUGGCCCAa----AGC-UCG-----------AGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 143133 | 0.71 | 0.814079 |
Target: 5'- cCGCGUGAA-CGGGUUgugcaggcagaUCGAGgUCCGg -3' miRNA: 3'- uGUGCGCUUgGCCCAA-----------AGCUCgAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 179175 | 0.71 | 0.814079 |
Target: 5'- cCugGCGAccuucGCCGGGUccUCGGGCcggUCCa -3' miRNA: 3'- uGugCGCU-----UGGCCCAa-AGCUCG---AGGc -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 178434 | 0.71 | 0.82242 |
Target: 5'- gUugGCGGAUCGGGUcggCGcGUUCCGu -3' miRNA: 3'- uGugCGCUUGGCCCAaa-GCuCGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 4224 | 0.71 | 0.82242 |
Target: 5'- cCGCGgGGAgCGGGacgUCGAGCcCCGa -3' miRNA: 3'- uGUGCgCUUgGCCCaa-AGCUCGaGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 196190 | 0.7 | 0.830599 |
Target: 5'- -gGgGCGAcgGCCGGGUcccuggCGAGcCUCCGg -3' miRNA: 3'- ugUgCGCU--UGGCCCAaa----GCUC-GAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 67752 | 0.7 | 0.838609 |
Target: 5'- gGCcuCGCGAGCCGGGg-UCGu-CUCCGg -3' miRNA: 3'- -UGu-GCGCUUGGCCCaaAGCucGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 115459 | 0.7 | 0.844891 |
Target: 5'- uCACGCGAACCGGcuggcgcaGAGCUCg- -3' miRNA: 3'- uGUGCGCUUGGCCcaaag---CUCGAGgc -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 192485 | 0.7 | 0.86156 |
Target: 5'- gACGCGCGGACgGGGacgcgcUCGAGgUCUu -3' miRNA: 3'- -UGUGCGCUUGgCCCaa----AGCUCgAGGc -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 130217 | 0.69 | 0.868831 |
Target: 5'- aGCgACGCGAcgcccgagcuGCCGGGgaUCG-GCUCgGg -3' miRNA: 3'- -UG-UGCGCU----------UGGCCCaaAGCuCGAGgC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 90290 | 0.69 | 0.875902 |
Target: 5'- -uGCGCGGACCGGGcccgaUUGAGCgcggagCUGa -3' miRNA: 3'- ugUGCGCUUGGCCCaa---AGCUCGa-----GGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 102340 | 0.69 | 0.882769 |
Target: 5'- -gACGaCGAGCCGGGUc-CGGGCgucggucgUCCGg -3' miRNA: 3'- ugUGC-GCUUGGCCCAaaGCUCG--------AGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 127154 | 0.69 | 0.882769 |
Target: 5'- gGCGCGCGcuCCGGGUcgaaguaGGGCagggUCCGg -3' miRNA: 3'- -UGUGCGCuuGGCCCAaag----CUCG----AGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 226730 | 0.69 | 0.889429 |
Target: 5'- cGCGgGCGAcgacGgCGGGac-CGGGCUCCGg -3' miRNA: 3'- -UGUgCGCU----UgGCCCaaaGCUCGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 141881 | 0.69 | 0.889429 |
Target: 5'- aACGcCGCGAGCCGucUcUCGGGUUCCa -3' miRNA: 3'- -UGU-GCGCUUGGCccAaAGCUCGAGGc -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 196498 | 0.69 | 0.889429 |
Target: 5'- gGCugGCGGacGCCGGGUUcgacCGGGacaggaUCCGc -3' miRNA: 3'- -UGugCGCU--UGGCCCAAa---GCUCg-----AGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 204658 | 0.69 | 0.895876 |
Target: 5'- gACGCGCGGgggaucGCCGGcGgcUCGcucccGCUCCGu -3' miRNA: 3'- -UGUGCGCU------UGGCC-CaaAGCu----CGAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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