miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 152598 1.09 0.005146
Target:  5'- gACACGCGAACCGGGUUUCGAGCUCCGg -3'
miRNA:   3'- -UGUGCGCUUGGCCCAAAGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 128646 0.8 0.339672
Target:  5'- -gACGCuGGGCCGGGggaUCGAGCUCCu -3'
miRNA:   3'- ugUGCG-CUUGGCCCaa-AGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 116889 0.79 0.370102
Target:  5'- gGCugGCGGcgggGCCGGGg--CGGGCUCCu -3'
miRNA:   3'- -UGugCGCU----UGGCCCaaaGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 147050 0.79 0.404832
Target:  5'- uGCGCGCGGACCGGGgcgggaacgugugggCGAcGCUCUGg -3'
miRNA:   3'- -UGUGCGCUUGGCCCaaa------------GCU-CGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 77953 0.78 0.453903
Target:  5'- gAguCGCGAGCCGGGUUcgucUCGGGgaCCGa -3'
miRNA:   3'- -UguGCGCUUGGCCCAA----AGCUCgaGGC- -5'
9032 5' -55.6 NC_002512.2 + 132098 0.75 0.56639
Target:  5'- aGCGCuCGGACCGGGgcUCGAGggCCGc -3'
miRNA:   3'- -UGUGcGCUUGGCCCaaAGCUCgaGGC- -5'
9032 5' -55.6 NC_002512.2 + 198153 0.74 0.655155
Target:  5'- cCGCGCGGGCCGGG--UCG-GCgCCGg -3'
miRNA:   3'- uGUGCGCUUGGCCCaaAGCuCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 220307 0.74 0.655155
Target:  5'- aGC-CGCcgggGGGCCGGGggcCGGGCUCCGg -3'
miRNA:   3'- -UGuGCG----CUUGGCCCaaaGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 5495 0.73 0.68469
Target:  5'- gGCGCGCGuccgcGCCGGGgucgCGAGgUCCc -3'
miRNA:   3'- -UGUGCGCu----UGGCCCaaa-GCUCgAGGc -5'
9032 5' -55.6 NC_002512.2 + 106594 0.73 0.713858
Target:  5'- cUugGCGAACCGGGccagcCGGcGCUCCa -3'
miRNA:   3'- uGugCGCUUGGCCCaaa--GCU-CGAGGc -5'
9032 5' -55.6 NC_002512.2 + 146832 0.73 0.713858
Target:  5'- cGCGCGCGAggucgccugGCCcaGGGUgcUCGAGCUCgCGc -3'
miRNA:   3'- -UGUGCGCU---------UGG--CCCAa-AGCUCGAG-GC- -5'
9032 5' -55.6 NC_002512.2 + 93789 0.72 0.732991
Target:  5'- ---aGCGGAUCGGGUgaCGGGCgUCCGa -3'
miRNA:   3'- ugugCGCUUGGCCCAaaGCUCG-AGGC- -5'
9032 5' -55.6 NC_002512.2 + 106631 0.72 0.751797
Target:  5'- gACAUGCGGcGCCGGucgUCGAGCUCg- -3'
miRNA:   3'- -UGUGCGCU-UGGCCcaaAGCUCGAGgc -5'
9032 5' -55.6 NC_002512.2 + 224928 0.72 0.751797
Target:  5'- uCGCGgGGACCGGGUccgugccggugUCGcucGGCUCCGc -3'
miRNA:   3'- uGUGCgCUUGGCCCAa----------AGC---UCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 131735 0.72 0.751797
Target:  5'- gACGCgGCGAccGCCGGGg--CGGGCggCCGc -3'
miRNA:   3'- -UGUG-CGCU--UGGCCCaaaGCUCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 176443 0.72 0.761056
Target:  5'- uGCGcCGCGGuCgGGGUgUCGGGUUCCGc -3'
miRNA:   3'- -UGU-GCGCUuGgCCCAaAGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 21962 0.72 0.761056
Target:  5'- aGCAC-C--ACCGGGcccgUUCGAGCUCCGc -3'
miRNA:   3'- -UGUGcGcuUGGCCCa---AAGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 12433 0.71 0.779245
Target:  5'- cGCGCGCGAGgCGGGagcUGGGCUUCu -3'
miRNA:   3'- -UGUGCGCUUgGCCCaaaGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 220127 0.71 0.788159
Target:  5'- cCACGCGGGgCGGcGggUCcGGCUCCGc -3'
miRNA:   3'- uGUGCGCUUgGCC-CaaAGcUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 227435 0.71 0.796941
Target:  5'- -gGCGCGGGCCGcGGUcaccUUCGcGCUgCCGg -3'
miRNA:   3'- ugUGCGCUUGGC-CCA----AAGCuCGA-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.