miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 4224 0.71 0.82242
Target:  5'- cCGCGgGGAgCGGGacgUCGAGCcCCGa -3'
miRNA:   3'- uGUGCgCUUgGCCCaa-AGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 5167 0.66 0.974583
Target:  5'- -gGCGCG-ACCGGGg--CG-GCggCCGg -3'
miRNA:   3'- ugUGCGCuUGGCCCaaaGCuCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 5495 0.73 0.68469
Target:  5'- gGCGCGCGuccgcGCCGGGgucgCGAGgUCCc -3'
miRNA:   3'- -UGUGCGCu----UGGCCCaaa-GCUCgAGGc -5'
9032 5' -55.6 NC_002512.2 + 6664 0.66 0.95964
Target:  5'- uGCAC-CGAGCCGGccgggaCGcGCUCCGg -3'
miRNA:   3'- -UGUGcGCUUGGCCcaaa--GCuCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 12433 0.71 0.779245
Target:  5'- cGCGCGCGAGgCGGGagcUGGGCUUCu -3'
miRNA:   3'- -UGUGCGCUUgGCCCaaaGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 14529 0.66 0.965896
Target:  5'- aGCGCGCGAcggagucgacggaGCCGGGcacgauccggUCGAGgaagCCGg -3'
miRNA:   3'- -UGUGCGCU-------------UGGCCCaa--------AGCUCga--GGC- -5'
9032 5' -55.6 NC_002512.2 + 17112 0.66 0.974583
Target:  5'- -gACGCGGACaccaGGGccgagCGAGC-CCGc -3'
miRNA:   3'- ugUGCGCUUGg---CCCaaa--GCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 20789 0.66 0.969189
Target:  5'- gACACGgGGugacgacCCGGacgUCGGGCUCCc -3'
miRNA:   3'- -UGUGCgCUu------GGCCcaaAGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 21062 0.66 0.95964
Target:  5'- gGCGCGUGAgggcGCaCGGGcggCGGucccGCUCCGg -3'
miRNA:   3'- -UGUGCGCU----UG-GCCCaaaGCU----CGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 21962 0.72 0.761056
Target:  5'- aGCAC-C--ACCGGGcccgUUCGAGCUCCGc -3'
miRNA:   3'- -UGUGcGcuUGGCCCa---AAGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 25208 0.67 0.939537
Target:  5'- cCGCGaCGGAgCGGGag-CGAGCcgCCGg -3'
miRNA:   3'- uGUGC-GCUUgGCCCaaaGCUCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 27242 0.67 0.93486
Target:  5'- ---aGCGGGCCGGGcUagGAGCUCa- -3'
miRNA:   3'- ugugCGCUUGGCCCaAagCUCGAGgc -5'
9032 5' -55.6 NC_002512.2 + 32903 0.66 0.966205
Target:  5'- -aGgGCGAACUGGGgccgaUUCGAGUaCCu -3'
miRNA:   3'- ugUgCGCUUGGCCCa----AAGCUCGaGGc -5'
9032 5' -55.6 NC_002512.2 + 35051 0.66 0.964
Target:  5'- cCGCaCGGGCCGGGacagcaccacggugcCGAGCUCCu -3'
miRNA:   3'- uGUGcGCUUGGCCCaaa------------GCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 36190 0.66 0.974583
Target:  5'- gACGCGUGcAACCGGccccuaucCGAGgUCCGa -3'
miRNA:   3'- -UGUGCGC-UUGGCCcaaa----GCUCgAGGC- -5'
9032 5' -55.6 NC_002512.2 + 47449 0.67 0.952246
Target:  5'- cGCACgGCGGagGCCGaGGc--CGAGUUCCGc -3'
miRNA:   3'- -UGUG-CGCU--UGGC-CCaaaGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 55194 0.66 0.974583
Target:  5'- uUACGUGggUauaaaaaGGGUagugccgUCGAGCUCUGc -3'
miRNA:   3'- uGUGCGCuuGg------CCCAa------AGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 67752 0.7 0.838609
Target:  5'- gGCcuCGCGAGCCGGGg-UCGu-CUCCGg -3'
miRNA:   3'- -UGu-GCGCUUGGCCCaaAGCucGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 75117 0.67 0.943992
Target:  5'- cCugGCGGACaCGGGgagaCGGGCaCCGc -3'
miRNA:   3'- uGugCGCUUG-GCCCaaa-GCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 76670 0.66 0.963024
Target:  5'- gACGgGgGAACCGGGgcgggaCGGGUcCCGg -3'
miRNA:   3'- -UGUgCgCUUGGCCCaaa---GCUCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.