miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 227435 0.71 0.796941
Target:  5'- -gGCGCGGGCCGcGGUcaccUUCGcGCUgCCGg -3'
miRNA:   3'- ugUGCGCUUGGC-CCA----AAGCuCGA-GGC- -5'
9032 5' -55.6 NC_002512.2 + 227209 0.66 0.963024
Target:  5'- cGCGCGCGGACCaGGaggCG-GCggaCCGg -3'
miRNA:   3'- -UGUGCGCUUGGcCCaaaGCuCGa--GGC- -5'
9032 5' -55.6 NC_002512.2 + 227098 0.67 0.943992
Target:  5'- gGC-CGCcGGCCGGG--UCGGGCUCa- -3'
miRNA:   3'- -UGuGCGcUUGGCCCaaAGCUCGAGgc -5'
9032 5' -55.6 NC_002512.2 + 226730 0.69 0.889429
Target:  5'- cGCGgGCGAcgacGgCGGGac-CGGGCUCCGg -3'
miRNA:   3'- -UGUgCGCU----UgGCCCaaaGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 225792 0.69 0.895876
Target:  5'- -uGCGCcGGCCGGGccgCGGGCggCCGg -3'
miRNA:   3'- ugUGCGcUUGGCCCaaaGCUCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 224928 0.72 0.751797
Target:  5'- uCGCGgGGACCGGGUccgugccggugUCGcucGGCUCCGc -3'
miRNA:   3'- uGUGCgCUUGGCCCAa----------AGC---UCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 221552 0.68 0.924835
Target:  5'- cUACGCGGAcCCGcGGUcUCcGGCUCCc -3'
miRNA:   3'- uGUGCGCUU-GGC-CCAaAGcUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 221399 0.66 0.969189
Target:  5'- -gGCGCGGGCgGGGaggcggCGGGUcugUCCGa -3'
miRNA:   3'- ugUGCGCUUGgCCCaaa---GCUCG---AGGC- -5'
9032 5' -55.6 NC_002512.2 + 220307 0.74 0.655155
Target:  5'- aGC-CGCcgggGGGCCGGGggcCGGGCUCCGg -3'
miRNA:   3'- -UGuGCG----CUUGGCCCaaaGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 220127 0.71 0.788159
Target:  5'- cCACGCGGGgCGGcGggUCcGGCUCCGc -3'
miRNA:   3'- uGUGCGCUUgGCC-CaaAGcUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 219940 0.66 0.968314
Target:  5'- gACGCGCGGGggaggguggaucccCCGGGUcgCGcGCUCa- -3'
miRNA:   3'- -UGUGCGCUU--------------GGCCCAaaGCuCGAGgc -5'
9032 5' -55.6 NC_002512.2 + 217296 0.68 0.919487
Target:  5'- gAC-CGCGcGCCGGGagaugaUCG-GCUCCGc -3'
miRNA:   3'- -UGuGCGCuUGGCCCaa----AGCuCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 216042 0.68 0.908122
Target:  5'- gGCGCGCGAGugcgaCGGGcgUUCGGGg-CCGg -3'
miRNA:   3'- -UGUGCGCUUg----GCCCa-AAGCUCgaGGC- -5'
9032 5' -55.6 NC_002512.2 + 209434 0.66 0.974331
Target:  5'- cCGCGCGGaugaccgucaucgGCCGGcugaucUUCG-GCUCCGg -3'
miRNA:   3'- uGUGCGCU-------------UGGCCca----AAGCuCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 208587 0.68 0.908122
Target:  5'- cGCGCaGCGGGuCCGGGacgaggUCGAGgUUCCGu -3'
miRNA:   3'- -UGUG-CGCUU-GGCCCaa----AGCUC-GAGGC- -5'
9032 5' -55.6 NC_002512.2 + 204658 0.69 0.895876
Target:  5'- gACGCGCGGgggaucGCCGGcGgcUCGcucccGCUCCGu -3'
miRNA:   3'- -UGUGCGCU------UGGCC-CaaAGCu----CGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 198153 0.74 0.655155
Target:  5'- cCGCGCGGGCCGGG--UCG-GCgCCGg -3'
miRNA:   3'- uGUGCGCUUGGCCCaaAGCuCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 196498 0.69 0.889429
Target:  5'- gGCugGCGGacGCCGGGUUcgacCGGGacaggaUCCGc -3'
miRNA:   3'- -UGugCGCU--UGGCCCAAa---GCUCg-----AGGC- -5'
9032 5' -55.6 NC_002512.2 + 196407 0.66 0.969189
Target:  5'- gGCGCGgGGACgCGGGgggCG-GCggCCGg -3'
miRNA:   3'- -UGUGCgCUUG-GCCCaaaGCuCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 196190 0.7 0.830599
Target:  5'- -gGgGCGAcgGCCGGGUcccuggCGAGcCUCCGg -3'
miRNA:   3'- ugUgCGCU--UGGCCCAaa----GCUC-GAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.