miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 121507 0.66 0.971162
Target:  5'- -gGCGCGAGCaugaacgucauccuCGGG----GAGCUCCGg -3'
miRNA:   3'- ugUGCGCUUG--------------GCCCaaagCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 109169 0.66 0.966205
Target:  5'- uCGCGCgGGGCCGGGaugaaGAGCcCCa -3'
miRNA:   3'- uGUGCG-CUUGGCCCaaag-CUCGaGGc -5'
9032 5' -55.6 NC_002512.2 + 140041 0.66 0.966205
Target:  5'- cGCACGCaGAACCGGGc--CGuGCagCGc -3'
miRNA:   3'- -UGUGCG-CUUGGCCCaaaGCuCGagGC- -5'
9032 5' -55.6 NC_002512.2 + 20789 0.66 0.969189
Target:  5'- gACACGgGGugacgacCCGGacgUCGGGCUCCc -3'
miRNA:   3'- -UGUGCgCUu------GGCCcaaAGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 111913 0.66 0.969189
Target:  5'- cCGCGCGggUuguuCGGGUgcCGgaacAGCUCCa -3'
miRNA:   3'- uGUGCGCuuG----GCCCAaaGC----UCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 17112 0.66 0.974583
Target:  5'- -gACGCGGACaccaGGGccgagCGAGC-CCGc -3'
miRNA:   3'- ugUGCGCUUGg---CCCaaa--GCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 5167 0.66 0.974583
Target:  5'- -gGCGCG-ACCGGGg--CG-GCggCCGg -3'
miRNA:   3'- ugUGCGCuUGGCCCaaaGCuCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 83070 0.66 0.974583
Target:  5'- cGCGCGCGAAggucuCCaGGUccCGGGCcuccUCCGg -3'
miRNA:   3'- -UGUGCGCUU-----GGcCCAaaGCUCG----AGGC- -5'
9032 5' -55.6 NC_002512.2 + 36190 0.66 0.974583
Target:  5'- gACGCGUGcAACCGGccccuaucCGAGgUCCGa -3'
miRNA:   3'- -UGUGCGC-UUGGCCcaaa----GCUCgAGGC- -5'
9032 5' -55.6 NC_002512.2 + 14529 0.66 0.965896
Target:  5'- aGCGCGCGAcggagucgacggaGCCGGGcacgauccggUCGAGgaagCCGg -3'
miRNA:   3'- -UGUGCGCU-------------UGGCCCaa--------AGCUCga--GGC- -5'
9032 5' -55.6 NC_002512.2 + 35051 0.66 0.964
Target:  5'- cCGCaCGGGCCGGGacagcaccacggugcCGAGCUCCu -3'
miRNA:   3'- uGUGcGCUUGGCCCaaa------------GCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 76670 0.66 0.963024
Target:  5'- gACGgGgGAACCGGGgcgggaCGGGUcCCGg -3'
miRNA:   3'- -UGUgCgCUUGGCCCaaa---GCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 125140 0.66 0.974583
Target:  5'- cACGCGUGAACCGcGG----GGGCcCCGg -3'
miRNA:   3'- -UGUGCGCUUGGC-CCaaagCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 150508 0.66 0.974583
Target:  5'- cGCcCGCGggUCGGGg--UGcAGUUCCa -3'
miRNA:   3'- -UGuGCGCuuGGCCCaaaGC-UCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 6664 0.66 0.95964
Target:  5'- uGCAC-CGAGCCGGccgggaCGcGCUCCGg -3'
miRNA:   3'- -UGUGcGCUUGGCCcaaa--GCuCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 113860 0.66 0.95964
Target:  5'- cUugGCGAACucuCGGGUgguguagUCGuGCUUCGc -3'
miRNA:   3'- uGugCGCUUG---GCCCAa------AGCuCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 21062 0.66 0.95964
Target:  5'- gGCGCGUGAgggcGCaCGGGcggCGGucccGCUCCGg -3'
miRNA:   3'- -UGUGCGCU----UG-GCCCaaaGCU----CGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 117717 0.66 0.971979
Target:  5'- cCGCGCGug-CGGGc-UCGAGCgCCGg -3'
miRNA:   3'- uGUGCGCuugGCCCaaAGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 115372 0.66 0.963024
Target:  5'- aGCAgGUcGACCGGGacgUCGAucuucgacagcaGCUCCGu -3'
miRNA:   3'- -UGUgCGcUUGGCCCaa-AGCU------------CGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 55194 0.66 0.974583
Target:  5'- uUACGUGggUauaaaaaGGGUagugccgUCGAGCUCUGc -3'
miRNA:   3'- uGUGCGCuuGg------CCCAa------AGCUCGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.