Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9032 | 5' | -55.6 | NC_002512.2 | + | 152598 | 1.09 | 0.005146 |
Target: 5'- gACACGCGAACCGGGUUUCGAGCUCCGg -3' miRNA: 3'- -UGUGCGCUUGGCCCAAAGCUCGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 128646 | 0.8 | 0.339672 |
Target: 5'- -gACGCuGGGCCGGGggaUCGAGCUCCu -3' miRNA: 3'- ugUGCG-CUUGGCCCaa-AGCUCGAGGc -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 147050 | 0.79 | 0.404832 |
Target: 5'- uGCGCGCGGACCGGGgcgggaacgugugggCGAcGCUCUGg -3' miRNA: 3'- -UGUGCGCUUGGCCCaaa------------GCU-CGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 116889 | 0.79 | 0.370102 |
Target: 5'- gGCugGCGGcgggGCCGGGg--CGGGCUCCu -3' miRNA: 3'- -UGugCGCU----UGGCCCaaaGCUCGAGGc -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 77953 | 0.78 | 0.453903 |
Target: 5'- gAguCGCGAGCCGGGUUcgucUCGGGgaCCGa -3' miRNA: 3'- -UguGCGCUUGGCCCAA----AGCUCgaGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 132098 | 0.75 | 0.56639 |
Target: 5'- aGCGCuCGGACCGGGgcUCGAGggCCGc -3' miRNA: 3'- -UGUGcGCUUGGCCCaaAGCUCgaGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 220307 | 0.74 | 0.655155 |
Target: 5'- aGC-CGCcgggGGGCCGGGggcCGGGCUCCGg -3' miRNA: 3'- -UGuGCG----CUUGGCCCaaaGCUCGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 198153 | 0.74 | 0.655155 |
Target: 5'- cCGCGCGGGCCGGG--UCG-GCgCCGg -3' miRNA: 3'- uGUGCGCUUGGCCCaaAGCuCGaGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 146832 | 0.73 | 0.713858 |
Target: 5'- cGCGCGCGAggucgccugGCCcaGGGUgcUCGAGCUCgCGc -3' miRNA: 3'- -UGUGCGCU---------UGG--CCCAa-AGCUCGAG-GC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 106594 | 0.73 | 0.713858 |
Target: 5'- cUugGCGAACCGGGccagcCGGcGCUCCa -3' miRNA: 3'- uGugCGCUUGGCCCaaa--GCU-CGAGGc -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 5495 | 0.73 | 0.68469 |
Target: 5'- gGCGCGCGuccgcGCCGGGgucgCGAGgUCCc -3' miRNA: 3'- -UGUGCGCu----UGGCCCaaa-GCUCgAGGc -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 21962 | 0.72 | 0.761056 |
Target: 5'- aGCAC-C--ACCGGGcccgUUCGAGCUCCGc -3' miRNA: 3'- -UGUGcGcuUGGCCCa---AAGCUCGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 224928 | 0.72 | 0.751797 |
Target: 5'- uCGCGgGGACCGGGUccgugccggugUCGcucGGCUCCGc -3' miRNA: 3'- uGUGCgCUUGGCCCAa----------AGC---UCGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 176443 | 0.72 | 0.761056 |
Target: 5'- uGCGcCGCGGuCgGGGUgUCGGGUUCCGc -3' miRNA: 3'- -UGU-GCGCUuGgCCCAaAGCUCGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 131735 | 0.72 | 0.751797 |
Target: 5'- gACGCgGCGAccGCCGGGg--CGGGCggCCGc -3' miRNA: 3'- -UGUG-CGCU--UGGCCCaaaGCUCGa-GGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 93789 | 0.72 | 0.732991 |
Target: 5'- ---aGCGGAUCGGGUgaCGGGCgUCCGa -3' miRNA: 3'- ugugCGCUUGGCCCAaaGCUCG-AGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 106631 | 0.72 | 0.751797 |
Target: 5'- gACAUGCGGcGCCGGucgUCGAGCUCg- -3' miRNA: 3'- -UGUGCGCU-UGGCCcaaAGCUCGAGgc -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 227435 | 0.71 | 0.796941 |
Target: 5'- -gGCGCGGGCCGcGGUcaccUUCGcGCUgCCGg -3' miRNA: 3'- ugUGCGCUUGGC-CCA----AAGCuCGA-GGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 220127 | 0.71 | 0.788159 |
Target: 5'- cCACGCGGGgCGGcGggUCcGGCUCCGc -3' miRNA: 3'- uGUGCGCUUgGCC-CaaAGcUCGAGGC- -5' |
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9032 | 5' | -55.6 | NC_002512.2 | + | 77316 | 0.71 | 0.796941 |
Target: 5'- --uCGCGAggcgACgGGGUcUCGGGCUCCu -3' miRNA: 3'- uguGCGCU----UGgCCCAaAGCUCGAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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