miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 143133 0.71 0.814079
Target:  5'- cCGCGUGAA-CGGGUUgugcaggcagaUCGAGgUCCGg -3'
miRNA:   3'- uGUGCGCUUgGCCCAA-----------AGCUCgAGGC- -5'
9032 5' -55.6 NC_002512.2 + 112949 0.71 0.805584
Target:  5'- aGCcCGCGGACCGGGUcgaagUCGaAGCcggggacgccgUCCGa -3'
miRNA:   3'- -UGuGCGCUUGGCCCAa----AGC-UCG-----------AGGC- -5'
9032 5' -55.6 NC_002512.2 + 109830 0.71 0.805584
Target:  5'- uCACGuCGAaccGCCGGGcgUCGGGgaCCGg -3'
miRNA:   3'- uGUGC-GCU---UGGCCCaaAGCUCgaGGC- -5'
9032 5' -55.6 NC_002512.2 + 179175 0.71 0.814079
Target:  5'- cCugGCGAccuucGCCGGGUccUCGGGCcggUCCa -3'
miRNA:   3'- uGugCGCU-----UGGCCCAa-AGCUCG---AGGc -5'
9032 5' -55.6 NC_002512.2 + 12433 0.71 0.779245
Target:  5'- cGCGCGCGAGgCGGGagcUGGGCUUCu -3'
miRNA:   3'- -UGUGCGCUUgGCCCaaaGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 77316 0.71 0.796941
Target:  5'- --uCGCGAggcgACgGGGUcUCGGGCUCCu -3'
miRNA:   3'- uguGCGCU----UGgCCCAaAGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 170980 0.71 0.805584
Target:  5'- cUACGUGAggACgGaGGgcUCGGGCUCCGg -3'
miRNA:   3'- uGUGCGCU--UGgC-CCaaAGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 4224 0.71 0.82242
Target:  5'- cCGCGgGGAgCGGGacgUCGAGCcCCGa -3'
miRNA:   3'- uGUGCgCUUgGCCCaa-AGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 115459 0.7 0.844891
Target:  5'- uCACGCGAACCGGcuggcgcaGAGCUCg- -3'
miRNA:   3'- uGUGCGCUUGGCCcaaag---CUCGAGgc -5'
9032 5' -55.6 NC_002512.2 + 196190 0.7 0.830599
Target:  5'- -gGgGCGAcgGCCGGGUcccuggCGAGcCUCCGg -3'
miRNA:   3'- ugUgCGCU--UGGCCCAaa----GCUC-GAGGC- -5'
9032 5' -55.6 NC_002512.2 + 192485 0.7 0.86156
Target:  5'- gACGCGCGGACgGGGacgcgcUCGAGgUCUu -3'
miRNA:   3'- -UGUGCGCUUGgCCCaa----AGCUCgAGGc -5'
9032 5' -55.6 NC_002512.2 + 67752 0.7 0.838609
Target:  5'- gGCcuCGCGAGCCGGGg-UCGu-CUCCGg -3'
miRNA:   3'- -UGu-GCGCUUGGCCCaaAGCucGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 127154 0.69 0.882769
Target:  5'- gGCGCGCGcuCCGGGUcgaaguaGGGCagggUCCGg -3'
miRNA:   3'- -UGUGCGCuuGGCCCAaag----CUCG----AGGC- -5'
9032 5' -55.6 NC_002512.2 + 102340 0.69 0.882769
Target:  5'- -gACGaCGAGCCGGGUc-CGGGCgucggucgUCCGg -3'
miRNA:   3'- ugUGC-GCUUGGCCCAaaGCUCG--------AGGC- -5'
9032 5' -55.6 NC_002512.2 + 90290 0.69 0.875902
Target:  5'- -uGCGCGGACCGGGcccgaUUGAGCgcggagCUGa -3'
miRNA:   3'- ugUGCGCUUGGCCCaa---AGCUCGa-----GGC- -5'
9032 5' -55.6 NC_002512.2 + 130217 0.69 0.868831
Target:  5'- aGCgACGCGAcgcccgagcuGCCGGGgaUCG-GCUCgGg -3'
miRNA:   3'- -UG-UGCGCU----------UGGCCCaaAGCuCGAGgC- -5'
9032 5' -55.6 NC_002512.2 + 97768 0.69 0.902108
Target:  5'- uGCuCGCGGccuACCGGGcggcccUCGAGCcCCGg -3'
miRNA:   3'- -UGuGCGCU---UGGCCCaa----AGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 204658 0.69 0.895876
Target:  5'- gACGCGCGGgggaucGCCGGcGgcUCGcucccGCUCCGu -3'
miRNA:   3'- -UGUGCGCU------UGGCC-CaaAGCu----CGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 225792 0.69 0.895876
Target:  5'- -uGCGCcGGCCGGGccgCGGGCggCCGg -3'
miRNA:   3'- ugUGCGcUUGGCCCaaaGCUCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 226730 0.69 0.889429
Target:  5'- cGCGgGCGAcgacGgCGGGac-CGGGCUCCGg -3'
miRNA:   3'- -UGUgCGCU----UgGCCCaaaGCUCGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.