miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 77316 0.71 0.796941
Target:  5'- --uCGCGAggcgACgGGGUcUCGGGCUCCu -3'
miRNA:   3'- uguGCGCU----UGgCCCAaAGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 77551 0.66 0.971979
Target:  5'- uACGuCGCGGACggCGGGUcgcccaCGGGCgUCCGa -3'
miRNA:   3'- -UGU-GCGCUUG--GCCCAaa----GCUCG-AGGC- -5'
9032 5' -55.6 NC_002512.2 + 77953 0.78 0.453903
Target:  5'- gAguCGCGAGCCGGGUUcgucUCGGGgaCCGa -3'
miRNA:   3'- -UguGCGCUUGGCCCAA----AGCUCgaGGC- -5'
9032 5' -55.6 NC_002512.2 + 81060 0.67 0.948228
Target:  5'- uGCGCcCGGACCGcccccaGGa--CGAGCUCCGa -3'
miRNA:   3'- -UGUGcGCUUGGC------CCaaaGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 82613 0.67 0.939537
Target:  5'- gACGCGCGGcgucCCGGG--UCGGGUUUCc -3'
miRNA:   3'- -UGUGCGCUu---GGCCCaaAGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 83070 0.66 0.974583
Target:  5'- cGCGCGCGAAggucuCCaGGUccCGGGCcuccUCCGg -3'
miRNA:   3'- -UGUGCGCUU-----GGcCCAaaGCUCG----AGGC- -5'
9032 5' -55.6 NC_002512.2 + 83207 0.67 0.952246
Target:  5'- cGCGCGCGGGgCGGGgg--GAGCgUCGg -3'
miRNA:   3'- -UGUGCGCUUgGCCCaaagCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 87184 0.67 0.943992
Target:  5'- cCACGCGGagACCGcGGUgUUCGAguGCUCgGu -3'
miRNA:   3'- uGUGCGCU--UGGC-CCA-AAGCU--CGAGgC- -5'
9032 5' -55.6 NC_002512.2 + 87816 0.66 0.974331
Target:  5'- uGCACccccaGCGAucccccgGCCGGGcgUCGGGC-CCu -3'
miRNA:   3'- -UGUG-----CGCU-------UGGCCCaaAGCUCGaGGc -5'
9032 5' -55.6 NC_002512.2 + 90290 0.69 0.875902
Target:  5'- -uGCGCGGACCGGGcccgaUUGAGCgcggagCUGa -3'
miRNA:   3'- ugUGCGCUUGGCCCaa---AGCUCGa-----GGC- -5'
9032 5' -55.6 NC_002512.2 + 93789 0.72 0.732991
Target:  5'- ---aGCGGAUCGGGUgaCGGGCgUCCGa -3'
miRNA:   3'- ugugCGCUUGGCCCAaaGCUCG-AGGC- -5'
9032 5' -55.6 NC_002512.2 + 96737 0.66 0.969189
Target:  5'- cCGCGgGAACCGGacgagCGAGCggggccccgUCCGa -3'
miRNA:   3'- uGUGCgCUUGGCCcaaa-GCUCG---------AGGC- -5'
9032 5' -55.6 NC_002512.2 + 97410 0.67 0.952246
Target:  5'- -gACGCGGagGCCGGGgagagacgCGcGCUCCc -3'
miRNA:   3'- ugUGCGCU--UGGCCCaaa-----GCuCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 97768 0.69 0.902108
Target:  5'- uGCuCGCGGccuACCGGGcggcccUCGAGCcCCGg -3'
miRNA:   3'- -UGuGCGCU---UGGCCCaa----AGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 102340 0.69 0.882769
Target:  5'- -gACGaCGAGCCGGGUc-CGGGCgucggucgUCCGg -3'
miRNA:   3'- ugUGC-GCUUGGCCCAaaGCUCG--------AGGC- -5'
9032 5' -55.6 NC_002512.2 + 104690 0.66 0.969189
Target:  5'- gACACGCGcGACCGGaGUcUCGucCUCUc -3'
miRNA:   3'- -UGUGCGC-UUGGCC-CAaAGCucGAGGc -5'
9032 5' -55.6 NC_002512.2 + 106179 0.68 0.913915
Target:  5'- gUACgGCGAcGCCGGGUccUUCGGGUuggcgaucaUCCGg -3'
miRNA:   3'- uGUG-CGCU-UGGCCCA--AAGCUCG---------AGGC- -5'
9032 5' -55.6 NC_002512.2 + 106594 0.73 0.713858
Target:  5'- cUugGCGAACCGGGccagcCGGcGCUCCa -3'
miRNA:   3'- uGugCGCUUGGCCCaaa--GCU-CGAGGc -5'
9032 5' -55.6 NC_002512.2 + 106631 0.72 0.751797
Target:  5'- gACAUGCGGcGCCGGucgUCGAGCUCg- -3'
miRNA:   3'- -UGUGCGCU-UGGCCcaaAGCUCGAGgc -5'
9032 5' -55.6 NC_002512.2 + 109169 0.66 0.966205
Target:  5'- uCGCGCgGGGCCGGGaugaaGAGCcCCa -3'
miRNA:   3'- uGUGCG-CUUGGCCCaaag-CUCGaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.