miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 81060 0.67 0.948228
Target:  5'- uGCGCcCGGACCGcccccaGGa--CGAGCUCCGa -3'
miRNA:   3'- -UGUGcGCUUGGC------CCaaaGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 141208 0.68 0.924835
Target:  5'- aGCA-GCGcAGCCGGGgcgggUUCGGGCggUCCc -3'
miRNA:   3'- -UGUgCGC-UUGGCCCa----AAGCUCG--AGGc -5'
9032 5' -55.6 NC_002512.2 + 134914 0.68 0.928445
Target:  5'- gUACGCGGACCGGcgcggcGUcugUCGgaucuuccuccgggGGCUCCGg -3'
miRNA:   3'- uGUGCGCUUGGCC------CAa--AGC--------------UCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 135586 0.68 0.929959
Target:  5'- -gGCGC-AACCGGGUggaCGAccGCUCCc -3'
miRNA:   3'- ugUGCGcUUGGCCCAaa-GCU--CGAGGc -5'
9032 5' -55.6 NC_002512.2 + 27242 0.67 0.93486
Target:  5'- ---aGCGGGCCGGGcUagGAGCUCa- -3'
miRNA:   3'- ugugCGCUUGGCCCaAagCUCGAGgc -5'
9032 5' -55.6 NC_002512.2 + 82613 0.67 0.939537
Target:  5'- gACGCGCGGcgucCCGGG--UCGGGUUUCc -3'
miRNA:   3'- -UGUGCGCUu---GGCCCaaAGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 25208 0.67 0.939537
Target:  5'- cCGCGaCGGAgCGGGag-CGAGCcgCCGg -3'
miRNA:   3'- uGUGC-GCUUgGCCCaaaGCUCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 75117 0.67 0.943992
Target:  5'- cCugGCGGACaCGGGgagaCGGGCaCCGc -3'
miRNA:   3'- uGugCGCUUG-GCCCaaa-GCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 87184 0.67 0.943992
Target:  5'- cCACGCGGagACCGcGGUgUUCGAguGCUCgGu -3'
miRNA:   3'- uGUGCGCU--UGGC-CCA-AAGCU--CGAGgC- -5'
9032 5' -55.6 NC_002512.2 + 106179 0.68 0.913915
Target:  5'- gUACgGCGAcGCCGGGUccUUCGGGUuggcgaucaUCCGg -3'
miRNA:   3'- uGUG-CGCU-UGGCCCA--AAGCUCG---------AGGC- -5'
9032 5' -55.6 NC_002512.2 + 97768 0.69 0.902108
Target:  5'- uGCuCGCGGccuACCGGGcggcccUCGAGCcCCGg -3'
miRNA:   3'- -UGuGCGCU---UGGCCCaa----AGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 130217 0.69 0.868831
Target:  5'- aGCgACGCGAcgcccgagcuGCCGGGgaUCG-GCUCgGg -3'
miRNA:   3'- -UG-UGCGCU----------UGGCCCaaAGCuCGAGgC- -5'
9032 5' -55.6 NC_002512.2 + 5495 0.73 0.68469
Target:  5'- gGCGCGCGuccgcGCCGGGgucgCGAGgUCCc -3'
miRNA:   3'- -UGUGCGCu----UGGCCCaaa-GCUCgAGGc -5'
9032 5' -55.6 NC_002512.2 + 131735 0.72 0.751797
Target:  5'- gACGCgGCGAccGCCGGGg--CGGGCggCCGc -3'
miRNA:   3'- -UGUG-CGCU--UGGCCCaaaGCUCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 21962 0.72 0.761056
Target:  5'- aGCAC-C--ACCGGGcccgUUCGAGCUCCGc -3'
miRNA:   3'- -UGUGcGcuUGGCCCa---AAGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 12433 0.71 0.779245
Target:  5'- cGCGCGCGAGgCGGGagcUGGGCUUCu -3'
miRNA:   3'- -UGUGCGCUUgGCCCaaaGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 77316 0.71 0.796941
Target:  5'- --uCGCGAggcgACgGGGUcUCGGGCUCCu -3'
miRNA:   3'- uguGCGCU----UGgCCCAaAGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 170980 0.71 0.805584
Target:  5'- cUACGUGAggACgGaGGgcUCGGGCUCCGg -3'
miRNA:   3'- uGUGCGCU--UGgC-CCaaAGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 4224 0.71 0.82242
Target:  5'- cCGCGgGGAgCGGGacgUCGAGCcCCGa -3'
miRNA:   3'- uGUGCgCUUgGCCCaa-AGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 67752 0.7 0.838609
Target:  5'- gGCcuCGCGAGCCGGGg-UCGu-CUCCGg -3'
miRNA:   3'- -UGu-GCGCUUGGCCCaaAGCucGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.