miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 123521 0.66 0.966205
Target:  5'- aACACcugaCGGGCCGcgaGGUggCGAGCUCgCGg -3'
miRNA:   3'- -UGUGc---GCUUGGC---CCAaaGCUCGAG-GC- -5'
9032 5' -55.6 NC_002512.2 + 109169 0.66 0.966205
Target:  5'- uCGCGCgGGGCCGGGaugaaGAGCcCCa -3'
miRNA:   3'- uGUGCG-CUUGGCCCaaag-CUCGaGGc -5'
9032 5' -55.6 NC_002512.2 + 140041 0.66 0.966205
Target:  5'- cGCACGCaGAACCGGGc--CGuGCagCGc -3'
miRNA:   3'- -UGUGCG-CUUGGCCCaaaGCuCGagGC- -5'
9032 5' -55.6 NC_002512.2 + 32903 0.66 0.966205
Target:  5'- -aGgGCGAACUGGGgccgaUUCGAGUaCCu -3'
miRNA:   3'- ugUgCGCUUGGCCCa----AAGCUCGaGGc -5'
9032 5' -55.6 NC_002512.2 + 14529 0.66 0.965896
Target:  5'- aGCGCGCGAcggagucgacggaGCCGGGcacgauccggUCGAGgaagCCGg -3'
miRNA:   3'- -UGUGCGCU-------------UGGCCCaa--------AGCUCga--GGC- -5'
9032 5' -55.6 NC_002512.2 + 35051 0.66 0.964
Target:  5'- cCGCaCGGGCCGGGacagcaccacggugcCGAGCUCCu -3'
miRNA:   3'- uGUGcGCUUGGCCCaaa------------GCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 115372 0.66 0.963024
Target:  5'- aGCAgGUcGACCGGGacgUCGAucuucgacagcaGCUCCGu -3'
miRNA:   3'- -UGUgCGcUUGGCCCaa-AGCU------------CGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 76670 0.66 0.963024
Target:  5'- gACGgGgGAACCGGGgcgggaCGGGUcCCGg -3'
miRNA:   3'- -UGUgCgCUUGGCCCaaa---GCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 227209 0.66 0.963024
Target:  5'- cGCGCGCGGACCaGGaggCG-GCggaCCGg -3'
miRNA:   3'- -UGUGCGCUUGGcCCaaaGCuCGa--GGC- -5'
9032 5' -55.6 NC_002512.2 + 116171 0.66 0.963024
Target:  5'- cGCugGC--GCCGGG---CGAGUUCCa -3'
miRNA:   3'- -UGugCGcuUGGCCCaaaGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 113860 0.66 0.95964
Target:  5'- cUugGCGAACucuCGGGUgguguagUCGuGCUUCGc -3'
miRNA:   3'- uGugCGCUUG---GCCCAa------AGCuCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 21062 0.66 0.95964
Target:  5'- gGCGCGUGAgggcGCaCGGGcggCGGucccGCUCCGg -3'
miRNA:   3'- -UGUGCGCU----UG-GCCCaaaGCU----CGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 6664 0.66 0.95964
Target:  5'- uGCAC-CGAGCCGGccgggaCGcGCUCCGg -3'
miRNA:   3'- -UGUGcGCUUGGCCcaaa--GCuCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 192789 0.67 0.956048
Target:  5'- gAC-CGU-AACCGGGUgucaCGAGUUCCa -3'
miRNA:   3'- -UGuGCGcUUGGCCCAaa--GCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 193961 0.67 0.956048
Target:  5'- -gGCGCGAgaggccGCCGG----CGAGCUCCu -3'
miRNA:   3'- ugUGCGCU------UGGCCcaaaGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 47449 0.67 0.952246
Target:  5'- cGCACgGCGGagGCCGaGGc--CGAGUUCCGc -3'
miRNA:   3'- -UGUG-CGCU--UGGC-CCaaaGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 125687 0.67 0.952246
Target:  5'- aGCACGUGGGCCagcaGGUUccgcugaaaGGGCUCCa -3'
miRNA:   3'- -UGUGCGCUUGGc---CCAAag-------CUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 83207 0.67 0.952246
Target:  5'- cGCGCGCGGGgCGGGgg--GAGCgUCGg -3'
miRNA:   3'- -UGUGCGCUUgGCCCaaagCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 97410 0.67 0.952246
Target:  5'- -gACGCGGagGCCGGGgagagacgCGcGCUCCc -3'
miRNA:   3'- ugUGCGCU--UGGCCCaaa-----GCuCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 81060 0.67 0.948228
Target:  5'- uGCGCcCGGACCGcccccaGGa--CGAGCUCCGa -3'
miRNA:   3'- -UGUGcGCUUGGC------CCaaaGCUCGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.