miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 92580 0.67 0.956603
Target:  5'- -aCGcCGCGGC-CGGGAGGGgcggcgguCCCGAGg -3'
miRNA:   3'- aaGC-GCGCUGuGCCCUUUU--------GGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 70054 0.67 0.956603
Target:  5'- -cCGgGgGACACuccauGGGAAACCCGAGu -3'
miRNA:   3'- aaGCgCgCUGUGc----CCUUUUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 23145 0.67 0.956224
Target:  5'- -gCGgGCGGCAucgcguuCGGGAucauGAGCCCGGu- -3'
miRNA:   3'- aaGCgCGCUGU-------GCCCU----UUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 77314 0.67 0.955843
Target:  5'- uUUCGCGaGGCgACGGGGucucgggcuccuGACCCGggGc -3'
miRNA:   3'- -AAGCGCgCUG-UGCCCUu-----------UUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 127872 0.67 0.952714
Target:  5'- -gCGCGCGGgACGGGuguuuUCCGAc- -3'
miRNA:   3'- aaGCGCGCUgUGCCCuuuu-GGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 95102 0.67 0.952714
Target:  5'- gUCGgGCccgggGACGCGGGuGGGGCUCGGAAc -3'
miRNA:   3'- aAGCgCG-----CUGUGCCC-UUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 23520 0.67 0.952714
Target:  5'- --gGCGUgaGGCAcCGGGA--GCCCGAGAu -3'
miRNA:   3'- aagCGCG--CUGU-GCCCUuuUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 117031 0.67 0.952714
Target:  5'- aUCG-GCGGC-CGGGAGuuCgCCGAGAu -3'
miRNA:   3'- aAGCgCGCUGuGCCCUUuuG-GGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 203246 0.67 0.952714
Target:  5'- cUCGUGCG-CugGuGGAucACCCGGu- -3'
miRNA:   3'- aAGCGCGCuGugC-CCUuuUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 212678 0.67 0.948597
Target:  5'- -aCGUGaGGCugGGGAAGACCaUGggGa -3'
miRNA:   3'- aaGCGCgCUGugCCCUUUUGG-GCuuU- -5'
9033 3' -54.3 NC_002512.2 + 111232 0.67 0.948597
Target:  5'- -aCGgGCGGC-CGGGc--GCCCGGAGc -3'
miRNA:   3'- aaGCgCGCUGuGCCCuuuUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 82707 0.67 0.948597
Target:  5'- -gUGCGCGGCGCGGG----CCCGc-- -3'
miRNA:   3'- aaGCGCGCUGUGCCCuuuuGGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 11843 0.67 0.948597
Target:  5'- -aCGaCGCGGCgACGGGGAggGACgCGGAGg -3'
miRNA:   3'- aaGC-GCGCUG-UGCCCUU--UUGgGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 29731 0.67 0.948597
Target:  5'- gUCGCccuaccgugGCGGCGCGcGaGggGGCCCGGc- -3'
miRNA:   3'- aAGCG---------CGCUGUGC-C-CuuUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 137217 0.67 0.948597
Target:  5'- -gCGCGCccGGCGCGGGcggccguCCCGGAu -3'
miRNA:   3'- aaGCGCG--CUGUGCCCuuuu---GGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 152458 0.67 0.948597
Target:  5'- -gCGCGCGGCguuGGGAGGcguCCCGGGu -3'
miRNA:   3'- aaGCGCGCUGug-CCCUUUu--GGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 47716 0.67 0.948597
Target:  5'- -cUGCGCGccgccuCGCGGGAGgagGGCUCGGAAc -3'
miRNA:   3'- aaGCGCGCu-----GUGCCCUU---UUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 74646 0.67 0.944249
Target:  5'- -aCGcCGCGACggGCGGGAcgGCCgCGGGc -3'
miRNA:   3'- aaGC-GCGCUG--UGCCCUuuUGG-GCUUu -5'
9033 3' -54.3 NC_002512.2 + 46750 0.67 0.944249
Target:  5'- -gCGCGCG-CAgGGGAAccgGGCCCuGAAc -3'
miRNA:   3'- aaGCGCGCuGUgCCCUU---UUGGG-CUUu -5'
9033 3' -54.3 NC_002512.2 + 134858 0.68 0.939668
Target:  5'- -cCGCGCGACGucuCGGGcgacgccgucgGGGACCUGGAc -3'
miRNA:   3'- aaGCGCGCUGU---GCCC-----------UUUUGGGCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.