miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 131297 0.66 0.969968
Target:  5'- -aCGCGCGGgAgguCGGGAAGAUCCu--- -3'
miRNA:   3'- aaGCGCGCUgU---GCCCUUUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 92030 0.66 0.969968
Target:  5'- --gGCGUGGgAgGGGAAGACgCGGGAg -3'
miRNA:   3'- aagCGCGCUgUgCCCUUUUGgGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 131034 0.66 0.969083
Target:  5'- -cCGCGCGuCACGucacguugaugacaGGcaGAAACCCGAGGa -3'
miRNA:   3'- aaGCGCGCuGUGC--------------CC--UUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 67998 0.66 0.969083
Target:  5'- --gGCGCGAgGagaGGGAGcgacgagacgcaccGACCCGGGAg -3'
miRNA:   3'- aagCGCGCUgUg--CCCUU--------------UUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 112736 0.66 0.96818
Target:  5'- gUUC-CGCGGCACGcGGAAGGcggagagccggccguCCCGGAc -3'
miRNA:   3'- -AAGcGCGCUGUGC-CCUUUU---------------GGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 149219 0.66 0.966946
Target:  5'- gUCGcCGcCGcCGCGGGAccgacGGACCCGGc- -3'
miRNA:   3'- aAGC-GC-GCuGUGCCCU-----UUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 39724 0.66 0.966946
Target:  5'- aUCGgGuCGACgACGGuGAAGACCCa--- -3'
miRNA:   3'- aAGCgC-GCUG-UGCC-CUUUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 158693 0.66 0.966946
Target:  5'- --gGC-CGGgACGGGGAGguGCCCGAGGu -3'
miRNA:   3'- aagCGcGCUgUGCCCUUU--UGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 42582 0.66 0.966946
Target:  5'- -cCGCGaGGCgagcgGCGGGGcGGACCCGAAGc -3'
miRNA:   3'- aaGCGCgCUG-----UGCCCU-UUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 117762 0.67 0.963714
Target:  5'- cUUCGCGCcAUGCGGGAGGGCgucuUCGAc- -3'
miRNA:   3'- -AAGCGCGcUGUGCCCUUUUG----GGCUuu -5'
9033 3' -54.3 NC_002512.2 + 155414 0.67 0.963714
Target:  5'- gUCGCucuGCGAC-CGGGAGuGCCCc--- -3'
miRNA:   3'- aAGCG---CGCUGuGCCCUUuUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 218970 0.67 0.960268
Target:  5'- gUCGC-CGGCugGGaGGuccGGCCCGggGu -3'
miRNA:   3'- aAGCGcGCUGugCC-CUu--UUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 93723 0.67 0.960268
Target:  5'- -cCGCGCGGCggaucgacggggACGGGGAcggggacggagGGCUCGGAGg -3'
miRNA:   3'- aaGCGCGCUG------------UGCCCUU-----------UUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 226208 0.67 0.960268
Target:  5'- -gCGCGCGGC-CGGGccaucaccggGGAGCCgGAGc -3'
miRNA:   3'- aaGCGCGCUGuGCCC----------UUUUGGgCUUu -5'
9033 3' -54.3 NC_002512.2 + 226464 0.67 0.960268
Target:  5'- -cCcCGCGAgGCGGGAGgaggccggGGCCCGGGc -3'
miRNA:   3'- aaGcGCGCUgUGCCCUU--------UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 124761 0.67 0.959912
Target:  5'- -gUGCgGCGACgACGGGugcgagggcugccGGGACCCGggGa -3'
miRNA:   3'- aaGCG-CGCUG-UGCCC-------------UUUUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 119564 0.67 0.956603
Target:  5'- -cCGgGCGGacCGCGGGA--GCCCGGc- -3'
miRNA:   3'- aaGCgCGCU--GUGCCCUuuUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 126735 0.67 0.956603
Target:  5'- --gGCGCGGCGCGuGccucuuGGCCCGAGAc -3'
miRNA:   3'- aagCGCGCUGUGC-Ccuu---UUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 43321 0.67 0.956603
Target:  5'- gUgGCGaacaGACuGCGGGAGAACuuGGGAa -3'
miRNA:   3'- aAgCGCg---CUG-UGCCCUUUUGggCUUU- -5'
9033 3' -54.3 NC_002512.2 + 105003 0.67 0.956603
Target:  5'- gUCGC-CGugACGGGGccgccGCCCGGu- -3'
miRNA:   3'- aAGCGcGCugUGCCCUuu---UGGGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.