Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9033 | 3' | -54.3 | NC_002512.2 | + | 67998 | 0.66 | 0.969083 |
Target: 5'- --gGCGCGAgGagaGGGAGcgacgagacgcaccGACCCGGGAg -3' miRNA: 3'- aagCGCGCUgUg--CCCUU--------------UUGGGCUUU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 227305 | 0.66 | 0.969968 |
Target: 5'- --aGCGCcaGCAUGGGGGAgacgcgccggcGCCCGAGGa -3' miRNA: 3'- aagCGCGc-UGUGCCCUUU-----------UGGGCUUU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 149219 | 0.66 | 0.966946 |
Target: 5'- gUCGcCGcCGcCGCGGGAccgacGGACCCGGc- -3' miRNA: 3'- aAGC-GC-GCuGUGCCCU-----UUUGGGCUuu -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 112736 | 0.66 | 0.96818 |
Target: 5'- gUUC-CGCGGCACGcGGAAGGcggagagccggccguCCCGGAc -3' miRNA: 3'- -AAGcGCGCUGUGC-CCUUUU---------------GGGCUUu -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 131034 | 0.66 | 0.969083 |
Target: 5'- -cCGCGCGuCACGucacguugaugacaGGcaGAAACCCGAGGa -3' miRNA: 3'- aaGCGCGCuGUGC--------------CC--UUUUGGGCUUU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 42582 | 0.66 | 0.966946 |
Target: 5'- -cCGCGaGGCgagcgGCGGGGcGGACCCGAAGc -3' miRNA: 3'- aaGCGCgCUG-----UGCCCU-UUUGGGCUUU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 39724 | 0.66 | 0.966946 |
Target: 5'- aUCGgGuCGACgACGGuGAAGACCCa--- -3' miRNA: 3'- aAGCgC-GCUG-UGCC-CUUUUGGGcuuu -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 158693 | 0.66 | 0.966946 |
Target: 5'- --gGC-CGGgACGGGGAGguGCCCGAGGu -3' miRNA: 3'- aagCGcGCUgUGCCCUUU--UGGGCUUU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 92030 | 0.66 | 0.969968 |
Target: 5'- --gGCGUGGgAgGGGAAGACgCGGGAg -3' miRNA: 3'- aagCGCGCUgUgCCCUUUUGgGCUUU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 124761 | 0.67 | 0.959912 |
Target: 5'- -gUGCgGCGACgACGGGugcgagggcugccGGGACCCGggGa -3' miRNA: 3'- aaGCG-CGCUG-UGCCC-------------UUUUGGGCuuU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 29731 | 0.67 | 0.948597 |
Target: 5'- gUCGCccuaccgugGCGGCGCGcGaGggGGCCCGGc- -3' miRNA: 3'- aAGCG---------CGCUGUGC-C-CuuUUGGGCUuu -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 137217 | 0.67 | 0.948597 |
Target: 5'- -gCGCGCccGGCGCGGGcggccguCCCGGAu -3' miRNA: 3'- aaGCGCG--CUGUGCCCuuuu---GGGCUUu -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 105003 | 0.67 | 0.956603 |
Target: 5'- gUCGC-CGugACGGGGccgccGCCCGGu- -3' miRNA: 3'- aAGCGcGCugUGCCCUuu---UGGGCUuu -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 47716 | 0.67 | 0.948597 |
Target: 5'- -cUGCGCGccgccuCGCGGGAGgagGGCUCGGAAc -3' miRNA: 3'- aaGCGCGCu-----GUGCCCUU---UUGGGCUUU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 127872 | 0.67 | 0.952714 |
Target: 5'- -gCGCGCGGgACGGGuguuuUCCGAc- -3' miRNA: 3'- aaGCGCGCUgUGCCCuuuu-GGGCUuu -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 23520 | 0.67 | 0.952714 |
Target: 5'- --gGCGUgaGGCAcCGGGA--GCCCGAGAu -3' miRNA: 3'- aagCGCG--CUGU-GCCCUuuUGGGCUUU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 95102 | 0.67 | 0.952714 |
Target: 5'- gUCGgGCccgggGACGCGGGuGGGGCUCGGAAc -3' miRNA: 3'- aAGCgCG-----CUGUGCCC-UUUUGGGCUUU- -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 226208 | 0.67 | 0.960268 |
Target: 5'- -gCGCGCGGC-CGGGccaucaccggGGAGCCgGAGc -3' miRNA: 3'- aaGCGCGCUGuGCCC----------UUUUGGgCUUu -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 117762 | 0.67 | 0.963714 |
Target: 5'- cUUCGCGCcAUGCGGGAGGGCgucuUCGAc- -3' miRNA: 3'- -AAGCGCGcUGUGCCCUUUUG----GGCUuu -5' |
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9033 | 3' | -54.3 | NC_002512.2 | + | 46750 | 0.67 | 0.944249 |
Target: 5'- -gCGCGCG-CAgGGGAAccgGGCCCuGAAc -3' miRNA: 3'- aaGCGCGCuGUgCCCUU---UUGGG-CUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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