miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 134191 0.72 0.782447
Target:  5'- cUUCG-GCGACguGCGGGAGaucGACCUGAAGg -3'
miRNA:   3'- -AAGCgCGCUG--UGCCCUU---UUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 55231 0.72 0.782447
Target:  5'- aUCGUGCGGCACcuGGAGaacgugccggacGACCCGGAc -3'
miRNA:   3'- aAGCGCGCUGUGc-CCUU------------UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 74903 0.72 0.791583
Target:  5'- cUCGuCGCGACggACGcGGAGGCCCGGAGg -3'
miRNA:   3'- aAGC-GCGCUG--UGCcCUUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 215141 0.71 0.800576
Target:  5'- -cCGCGCGACGgGGGAGGcgacgagcACCUGGc- -3'
miRNA:   3'- aaGCGCGCUGUgCCCUUU--------UGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 219822 0.71 0.800576
Target:  5'- --gGCGCGACAgggggucgguCGGGggGuccgGCCCGggGg -3'
miRNA:   3'- aagCGCGCUGU----------GCCCuuU----UGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 87700 0.71 0.809418
Target:  5'- -aCGCGCGGCgACGcGGAGAcGCCgCGAGAc -3'
miRNA:   3'- aaGCGCGCUG-UGC-CCUUU-UGG-GCUUU- -5'
9033 3' -54.3 NC_002512.2 + 9934 0.71 0.809418
Target:  5'- -gCGCGCGACcCGGGGGAuccACCCu--- -3'
miRNA:   3'- aaGCGCGCUGuGCCCUUU---UGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 87737 0.71 0.8181
Target:  5'- cUCGgaCGCGACGCGGGggGagggaaucAgCCGAGAg -3'
miRNA:   3'- aAGC--GCGCUGUGCCCuuU--------UgGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 84546 0.71 0.834951
Target:  5'- gUCGgGCGGCGCGGcGAGGcGCUCGAc- -3'
miRNA:   3'- aAGCgCGCUGUGCC-CUUU-UGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 112390 0.7 0.843106
Target:  5'- gUCaGCGCGAaccCGGGAugcAGCCCGAGc -3'
miRNA:   3'- aAG-CGCGCUgu-GCCCUu--UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 227950 0.7 0.858837
Target:  5'- --gGCGgGggaGCGCGGGGGAGCCgGAGAg -3'
miRNA:   3'- aagCGCgC---UGUGCCCUUUUGGgCUUU- -5'
9033 3' -54.3 NC_002512.2 + 13713 0.7 0.858837
Target:  5'- -gCGCGaucccgaGACGCGGGA--GCCUGAGGg -3'
miRNA:   3'- aaGCGCg------CUGUGCCCUuuUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 50559 0.7 0.858837
Target:  5'- uUUCGCGCGGCGCugcaGGAucuGCCCGc-- -3'
miRNA:   3'- -AAGCGCGCUGUGc---CCUuu-UGGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 83723 0.7 0.858837
Target:  5'- -cCGCGCGGCAgCGGGAugacGAUCCGc-- -3'
miRNA:   3'- aaGCGCGCUGU-GCCCUu---UUGGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 120512 0.7 0.858837
Target:  5'- aUCGCG-GugACGGGGAGGCgCGGc- -3'
miRNA:   3'- aAGCGCgCugUGCCCUUUUGgGCUuu -5'
9033 3' -54.3 NC_002512.2 + 140991 0.7 0.8664
Target:  5'- aUCGgGgGGCACGGGGggGAGCgCGggGa -3'
miRNA:   3'- aAGCgCgCUGUGCCCU--UUUGgGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 227453 0.7 0.873754
Target:  5'- cUUCGCGCuGcCGgGGGAGAGgCCGggGg -3'
miRNA:   3'- -AAGCGCG-CuGUgCCCUUUUgGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 111255 0.7 0.873754
Target:  5'- gUCGgGCGGCACGcGGAcGAGCuuGAu- -3'
miRNA:   3'- aAGCgCGCUGUGC-CCU-UUUGggCUuu -5'
9033 3' -54.3 NC_002512.2 + 125141 0.7 0.873754
Target:  5'- -aCGCGUGAacCGCGGGGGc-CCCGggGg -3'
miRNA:   3'- aaGCGCGCU--GUGCCCUUuuGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 12434 0.7 0.873754
Target:  5'- -gCGCGCGAgGCGGGAGcugggcuucucGGCCaCGGu- -3'
miRNA:   3'- aaGCGCGCUgUGCCCUU-----------UUGG-GCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.