miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 43090 0.69 0.900972
Target:  5'- --gGCGCGGCgagcaGCGGGGAcGGCUCGAGGg -3'
miRNA:   3'- aagCGCGCUG-----UGCCCUU-UUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 43321 0.67 0.956603
Target:  5'- gUgGCGaacaGACuGCGGGAGAACuuGGGAa -3'
miRNA:   3'- aAgCGCg---CUG-UGCCCUUUUGggCUUU- -5'
9033 3' -54.3 NC_002512.2 + 45073 0.69 0.905362
Target:  5'- gUCGCGgcCGGCGCGGaagggucuccccgcGGAGGCCCGGGc -3'
miRNA:   3'- aAGCGC--GCUGUGCC--------------CUUUUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 46750 0.67 0.944249
Target:  5'- -gCGCGCG-CAgGGGAAccgGGCCCuGAAc -3'
miRNA:   3'- aaGCGCGCuGUgCCCUU---UUGGG-CUUu -5'
9033 3' -54.3 NC_002512.2 + 47377 0.69 0.894506
Target:  5'- -aCGCuGCGGCGCGcGGAGGACaCGGAGc -3'
miRNA:   3'- aaGCG-CGCUGUGC-CCUUUUGgGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 47716 0.67 0.948597
Target:  5'- -cUGCGCGccgccuCGCGGGAGgagGGCUCGGAAc -3'
miRNA:   3'- aaGCGCGCu-----GUGCCCUU---UUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 50559 0.7 0.858837
Target:  5'- uUUCGCGCGGCGCugcaGGAucuGCCCGc-- -3'
miRNA:   3'- -AAGCGCGCUGUGc---CCUuu-UGGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 54690 0.69 0.887811
Target:  5'- -aCGCgGCGaugaacGCGCGGGAGAACCCc--- -3'
miRNA:   3'- aaGCG-CGC------UGUGCCCUUUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 55231 0.72 0.782447
Target:  5'- aUCGUGCGGCACcuGGAGaacgugccggacGACCCGGAc -3'
miRNA:   3'- aAGCGCGCUGUGc-CCUU------------UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 67998 0.66 0.969083
Target:  5'- --gGCGCGAgGagaGGGAGcgacgagacgcaccGACCCGGGAg -3'
miRNA:   3'- aagCGCGCUgUg--CCCUU--------------UUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 70054 0.67 0.956603
Target:  5'- -cCGgGgGACACuccauGGGAAACCCGAGu -3'
miRNA:   3'- aaGCgCgCUGUGc----CCUUUUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 72874 0.69 0.887811
Target:  5'- gUCGC-CGuuguCGCGGGGcucGGGCCCGAAGc -3'
miRNA:   3'- aAGCGcGCu---GUGCCCU---UUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 74220 0.7 0.873754
Target:  5'- cUCGCGguccCGACGCGGGGcgaacggccGGACgCCGAAGc -3'
miRNA:   3'- aAGCGC----GCUGUGCCCU---------UUUG-GGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 74637 0.76 0.552326
Target:  5'- -cCGCGCGACGgcccgggggagauCGGGGGAGCUCGggGg -3'
miRNA:   3'- aaGCGCGCUGU-------------GCCCUUUUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 74646 0.67 0.944249
Target:  5'- -aCGcCGCGACggGCGGGAcgGCCgCGGGc -3'
miRNA:   3'- aaGC-GCGCUG--UGCCCUuuUGG-GCUUu -5'
9033 3' -54.3 NC_002512.2 + 74903 0.72 0.791583
Target:  5'- cUCGuCGCGACggACGcGGAGGCCCGGAGg -3'
miRNA:   3'- aAGC-GCGCUG--UGCcCUUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 74936 0.69 0.900972
Target:  5'- aUCGCG-GAcCGCGGGAGAGCgaCGGGAc -3'
miRNA:   3'- aAGCGCgCU-GUGCCCUUUUGg-GCUUU- -5'
9033 3' -54.3 NC_002512.2 + 77219 0.68 0.929797
Target:  5'- gUCGaGCGAC-CGGGAGGcgaacgagcGCCCGGGc -3'
miRNA:   3'- aAGCgCGCUGuGCCCUUU---------UGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 77314 0.67 0.955843
Target:  5'- uUUCGCGaGGCgACGGGGucucgggcuccuGACCCGggGc -3'
miRNA:   3'- -AAGCGCgCUG-UGCCCUu-----------UUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 78324 0.66 0.977845
Target:  5'- cUCGC-CGGCucuCGGGAAGGCgagaCCGGGAc -3'
miRNA:   3'- aAGCGcGCUGu--GCCCUUUUG----GGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.