miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 9934 0.71 0.809418
Target:  5'- -gCGCGCGACcCGGGGGAuccACCCu--- -3'
miRNA:   3'- aaGCGCGCUGuGCCCUUU---UGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 11677 0.69 0.907208
Target:  5'- -cCGcCGCGGCccgagGCGGGG--GCCCGAGGg -3'
miRNA:   3'- aaGC-GCGCUG-----UGCCCUuuUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 11843 0.67 0.948597
Target:  5'- -aCGaCGCGGCgACGGGGAggGACgCGGAGg -3'
miRNA:   3'- aaGC-GCGCUG-UGCCCUU--UUGgGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 12115 0.69 0.907208
Target:  5'- -cCGCGacccCGGCgACGGGGAcgGGCCCGggGu -3'
miRNA:   3'- aaGCGC----GCUG-UGCCCUU--UUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 12434 0.7 0.873754
Target:  5'- -gCGCGCGAgGCGGGAGcugggcuucucGGCCaCGGu- -3'
miRNA:   3'- aaGCGCGCUgUGCCCUU-----------UUGG-GCUuu -5'
9033 3' -54.3 NC_002512.2 + 12883 0.68 0.939668
Target:  5'- --aGC-CGACGCGGGAGAACgaGAGg -3'
miRNA:   3'- aagCGcGCUGUGCCCUUUUGggCUUu -5'
9033 3' -54.3 NC_002512.2 + 13713 0.7 0.858837
Target:  5'- -gCGCGaucccgaGACGCGGGA--GCCUGAGGg -3'
miRNA:   3'- aaGCGCg------CUGUGCCCUuuUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 15480 0.68 0.934851
Target:  5'- --gGCGCGGCGCGcuccGGCCCGAAGu -3'
miRNA:   3'- aagCGCGCUGUGCccuuUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 18920 0.69 0.900972
Target:  5'- --gGCGCGACACaGG---GCCCGGAc -3'
miRNA:   3'- aagCGCGCUGUGcCCuuuUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 20782 0.73 0.695274
Target:  5'- -aCGuCGgGACACGGGGugacGACCCGGAc -3'
miRNA:   3'- aaGC-GCgCUGUGCCCUu---UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 21803 0.68 0.934851
Target:  5'- --aGC-CGAgGCGGGAAGucagcgacggGCCCGAGAa -3'
miRNA:   3'- aagCGcGCUgUGCCCUUU----------UGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 22208 0.75 0.624173
Target:  5'- --aGCGCuucGGCcgGCGGGAGAGCCCGGGAc -3'
miRNA:   3'- aagCGCG---CUG--UGCCCUUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 23145 0.67 0.956224
Target:  5'- -gCGgGCGGCAucgcguuCGGGAucauGAGCCCGGu- -3'
miRNA:   3'- aaGCgCGCUGU-------GCCCU----UUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 23520 0.67 0.952714
Target:  5'- --gGCGUgaGGCAcCGGGA--GCCCGAGAu -3'
miRNA:   3'- aagCGCG--CUGU-GCCCUuuUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 26016 0.73 0.705291
Target:  5'- aUCG-GCGACACGucuGGAAAccuGCCCGAGAu -3'
miRNA:   3'- aAGCgCGCUGUGC---CCUUU---UGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 29731 0.67 0.948597
Target:  5'- gUCGCccuaccgugGCGGCGCGcGaGggGGCCCGGc- -3'
miRNA:   3'- aAGCG---------CGCUGUGC-C-CuuUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 36911 0.76 0.533469
Target:  5'- -gCGCGCcggagGACcaaGCGGGAGGACCCGggGg -3'
miRNA:   3'- aaGCGCG-----CUG---UGCCCUUUUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 39006 0.74 0.664945
Target:  5'- cUCGCcccGCGACGCgGGGAAAGCCCc--- -3'
miRNA:   3'- aAGCG---CGCUGUG-CCCUUUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 39724 0.66 0.966946
Target:  5'- aUCGgGuCGACgACGGuGAAGACCCa--- -3'
miRNA:   3'- aAGCgC-GCUG-UGCC-CUUUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 42582 0.66 0.966946
Target:  5'- -cCGCGaGGCgagcgGCGGGGcGGACCCGAAGc -3'
miRNA:   3'- aaGCGCgCUG-----UGCCCU-UUUGGGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.