miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 72874 0.69 0.887811
Target:  5'- gUCGC-CGuuguCGCGGGGcucGGGCCCGAAGc -3'
miRNA:   3'- aAGCGcGCu---GUGCCCU---UUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 13713 0.7 0.858837
Target:  5'- -gCGCGaucccgaGACGCGGGA--GCCUGAGGg -3'
miRNA:   3'- aaGCGCg------CUGUGCCCUuuUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 50559 0.7 0.858837
Target:  5'- uUUCGCGCGGCGCugcaGGAucuGCCCGc-- -3'
miRNA:   3'- -AAGCGCGCUGUGc---CCUuu-UGGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 83723 0.7 0.858837
Target:  5'- -cCGCGCGGCAgCGGGAugacGAUCCGc-- -3'
miRNA:   3'- aaGCGCGCUGU-GCCCUu---UUGGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 140991 0.7 0.8664
Target:  5'- aUCGgGgGGCACGGGGggGAGCgCGggGa -3'
miRNA:   3'- aAGCgCgCUGUGCCCU--UUUGgGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 12434 0.7 0.873754
Target:  5'- -gCGCGCGAgGCGGGAGcugggcuucucGGCCaCGGu- -3'
miRNA:   3'- aaGCGCGCUgUGCCCUU-----------UUGG-GCUuu -5'
9033 3' -54.3 NC_002512.2 + 125141 0.7 0.873754
Target:  5'- -aCGCGUGAacCGCGGGGGc-CCCGggGg -3'
miRNA:   3'- aaGCGCGCU--GUGCCCUUuuGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 74220 0.7 0.873754
Target:  5'- cUCGCGguccCGACGCGGGGcgaacggccGGACgCCGAAGc -3'
miRNA:   3'- aAGCGC----GCUGUGCCCU---------UUUG-GGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 54690 0.69 0.887811
Target:  5'- -aCGCgGCGaugaacGCGCGGGAGAACCCc--- -3'
miRNA:   3'- aaGCG-CGC------UGUGCCCUUUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 112390 0.7 0.843106
Target:  5'- gUCaGCGCGAaccCGGGAugcAGCCCGAGc -3'
miRNA:   3'- aAG-CGCGCUgu-GCCCUu--UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 84546 0.71 0.834951
Target:  5'- gUCGgGCGGCGCGGcGAGGcGCUCGAc- -3'
miRNA:   3'- aAGCgCGCUGUGCC-CUUU-UGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 9934 0.71 0.809418
Target:  5'- -gCGCGCGACcCGGGGGAuccACCCu--- -3'
miRNA:   3'- aaGCGCGCUGuGCCCUUU---UGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 74637 0.76 0.552326
Target:  5'- -cCGCGCGACGgcccgggggagauCGGGGGAGCUCGggGg -3'
miRNA:   3'- aaGCGCGCUGU-------------GCCCUUUUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 83208 0.76 0.573394
Target:  5'- -gCGCGCGGgGCGGGggGAgcgucgguCCCGggGa -3'
miRNA:   3'- aaGCGCGCUgUGCCCuuUU--------GGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 22208 0.75 0.624173
Target:  5'- --aGCGCuucGGCcgGCGGGAGAGCCCGGGAc -3'
miRNA:   3'- aagCGCG---CUG--UGCCCUUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 39006 0.74 0.664945
Target:  5'- cUCGCcccGCGACGCgGGGAAAGCCCc--- -3'
miRNA:   3'- aAGCG---CGCUGUG-CCCUUUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 20782 0.73 0.695274
Target:  5'- -aCGuCGgGACACGGGGugacGACCCGGAc -3'
miRNA:   3'- aaGC-GCgCUGUGCCCUu---UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 84155 0.72 0.763782
Target:  5'- -gCGCGUGGCcgcGCGGGAGGuCCCGGu- -3'
miRNA:   3'- aaGCGCGCUG---UGCCCUUUuGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 55231 0.72 0.782447
Target:  5'- aUCGUGCGGCACcuGGAGaacgugccggacGACCCGGAc -3'
miRNA:   3'- aAGCGCGCUGUGc-CCUU------------UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 74903 0.72 0.791583
Target:  5'- cUCGuCGCGACggACGcGGAGGCCCGGAGg -3'
miRNA:   3'- aAGC-GCGCUG--UGCcCUUUUGGGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.