miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 151519 1.04 0.011821
Target:  5'- gUUCGCGCGACACGGGAAAACCCGAAAa -3'
miRNA:   3'- -AAGCGCGCUGUGCCCUUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 192192 0.84 0.206511
Target:  5'- -gCGcCGCGGCugGGGAGGACCCGGAc -3'
miRNA:   3'- aaGC-GCGCUGugCCCUUUUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 106103 0.79 0.394399
Target:  5'- gUCGCGUucacgagccagacGuCACGGGAGAGCCCGAGGa -3'
miRNA:   3'- aAGCGCG-------------CuGUGCCCUUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 137891 0.79 0.421066
Target:  5'- -cCGCcgGCGACGCGGGA-GACCCGGAc -3'
miRNA:   3'- aaGCG--CGCUGUGCCCUuUUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 192789 0.77 0.504186
Target:  5'- gUCGUGCGGCGCGGGcacaacgccACCCGggGc -3'
miRNA:   3'- aAGCGCGCUGUGCCCuuu------UGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 36911 0.76 0.533469
Target:  5'- -gCGCGCcggagGACcaaGCGGGAGGACCCGggGg -3'
miRNA:   3'- aaGCGCG-----CUG---UGCCCUUUUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 74637 0.76 0.552326
Target:  5'- -cCGCGCGACGgcccgggggagauCGGGGGAGCUCGggGg -3'
miRNA:   3'- aaGCGCGCUGU-------------GCCCUUUUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 83208 0.76 0.573394
Target:  5'- -gCGCGCGGgGCGGGggGAgcgucgguCCCGggGa -3'
miRNA:   3'- aaGCGCGCUgUGCCCuuUU--------GGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 156555 0.76 0.573394
Target:  5'- ---aCGCGACGCGGGAGAGCCUGc-- -3'
miRNA:   3'- aagcGCGCUGUGCCCUUUUGGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 213842 0.75 0.624173
Target:  5'- --gGCGCGGCGCGGGGAGAagauCCCGc-- -3'
miRNA:   3'- aagCGCGCUGUGCCCUUUU----GGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 22208 0.75 0.624173
Target:  5'- --aGCGCuucGGCcgGCGGGAGAGCCCGGGAc -3'
miRNA:   3'- aagCGCG---CUG--UGCCCUUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 198672 0.74 0.664945
Target:  5'- --aGCGUGGCgACGGGggG-CCCGAAGu -3'
miRNA:   3'- aagCGCGCUG-UGCCCuuUuGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 39006 0.74 0.664945
Target:  5'- cUCGCcccGCGACGCgGGGAAAGCCCc--- -3'
miRNA:   3'- aAGCG---CGCUGUG-CCCUUUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 20782 0.73 0.695274
Target:  5'- -aCGuCGgGACACGGGGugacGACCCGGAc -3'
miRNA:   3'- aaGC-GCgCUGUGCCCUu---UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 108758 0.73 0.705291
Target:  5'- -gUGCGCGGCGCGGGc-GAUCCGGc- -3'
miRNA:   3'- aaGCGCGCUGUGCCCuuUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 26016 0.73 0.705291
Target:  5'- aUCG-GCGACACGucuGGAAAccuGCCCGAGAu -3'
miRNA:   3'- aAGCgCGCUGUGC---CCUUU---UGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 94805 0.73 0.725131
Target:  5'- -aCGCGgaGACGCGGGggGAgccguCCCGGAGc -3'
miRNA:   3'- aaGCGCg-CUGUGCCCuuUU-----GGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 218898 0.72 0.754271
Target:  5'- aUCGCGCGccACGCGGGGcgGCUCGu-- -3'
miRNA:   3'- aAGCGCGC--UGUGCCCUuuUGGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 84155 0.72 0.763782
Target:  5'- -gCGCGUGGCcgcGCGGGAGGuCCCGGu- -3'
miRNA:   3'- aaGCGCGCUG---UGCCCUUUuGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 111354 0.72 0.782447
Target:  5'- --gGCGCG-CACGaGGAcGACCCGggGc -3'
miRNA:   3'- aagCGCGCuGUGC-CCUuUUGGGCuuU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.